def __init__(self, file_path):
# load params file related to the given shybrid recording
params = sbio.get_params(file_path)['data']
# create a shybrid probe object
probe = sbprb.Probe(params['probe'])
nb_channels = probe.total_nb_channels
# translate the byte ordering
# TODO still ambiguous, shybrid should assume time_axis=1, since spike interface makes an assumption on the byte ordering
byte_order = params['order']
if byte_order == 'C':
time_axis = 1
elif byte_order == 'F':
time_axis = 0
# piggyback on binary data recording extractor
BinDatRecordingExtractor.__init__(self,
file_path,
params['fs'],
nb_channels,
params['dtype'],
time_axis=time_axis)
self = load_probe_file(self, params['probe'])
def __init__(self, file_path):
# load params file related to the given shybrid recording
assert self.installed, self.installation_mesg
assert Path(file_path).suffix in [
".yml", ".yaml"
], "The 'file_path' should be a yaml file!"
params = sbio.get_params(file_path)['data']
file_path = Path(file_path)
# create a shybrid probe object
probe = sbprb.Probe(params['probe'])
nb_channels = probe.total_nb_channels
# translate the byte ordering
byte_order = params['order']
if byte_order == 'C':
time_axis = 1
elif byte_order == 'F':
time_axis = 0
bin_file = file_path.parent / f"{file_path.stem}.bin"
# piggyback on binary data recording extractor
BinaryRecordingExtractor.__init__(self,
files_path=bin_file,
sampling_frequency=float(
params['fs']),
num_chan=nb_channels,
dtype=params['dtype'],
time_axis=time_axis)
# load probe file
probegroup = read_prb(params['probe'])
self.set_probegroup(probegroup, in_place=True)
self._kwargs = {'file_path': str(Path(file_path).absolute())}
def __init__(self, file_path):
# load params file related to the given shybrid recording
assert HAVE_SBEX, "To use the SHYBRID extractors, install shybrid: \n\n pip install shybrid\n\n"
params = sbio.get_params(file_path)['data']
# create a shybrid probe object
probe = sbprb.Probe(params['probe'])
nb_channels = probe.total_nb_channels
# translate the byte ordering
# TODO still ambiguous, shybrid should assume time_axis=1, since spike interface makes an assumption on the byte ordering
byte_order = params['order']
if byte_order == 'C':
time_axis = 1
elif byte_order == 'F':
time_axis = 0
# piggyback on binary data recording extractor
BinDatRecordingExtractor.__init__(self,
file_path,
params['fs'],
nb_channels,
params['dtype'],
time_axis=time_axis)
self._kwargs = {'file_path': str(Path(file_path).absolute())}
self = load_probe_file(self, params['probe'])