def ks2_to_alf(ks_path, out_path, ampfactor=1, label=None, force=True):
"""
Convert Kilosort 2 output to ALF dataset for single probe data
:param ks_path:
:param out_path:
:return:
"""
m = ephysqc.phy_model_from_ks2_path(ks_path)
ac = alf.EphysAlfCreator(m)
ac.convert(out_path, label=label, force=force, ampfactor=ampfactor)
def ks2_to_alf(ks_path, out_path, ampfactor=1, label=None, force=True):
"""
Convert Kilosort 2 output to ALF dataset for single probe data
:param ks_path:
:param out_path:
:return:
TODO change/remove `ampfactor` after seeing how amplitudes are calculated by ks2
"""
m = ephysqc.phy_model_from_ks2_path(ks_path)
ephysqc.unit_metrics_ks2(ks_path, m, save=True)
ac = alf.EphysAlfCreator(m)
ac.convert(out_path, label=label, force=force, ampfactor=ampfactor)
def ks2_to_alf(ks_path,
bin_path,
out_path,
bin_file=None,
ampfactor=1,
label=None,
force=True):
"""
Convert Kilosort 2 output to ALF dataset for single probe data
:param ks_path:
:param bin_path: path of raw data
:param out_path:
:return:
"""
m = ephysqc.phy_model_from_ks2_path(ks2_path=ks_path,
bin_path=bin_path,
bin_file=bin_file)
ephysqc.spike_sorting_metrics_ks2(ks_path, m, save=True)
ac = alf.EphysAlfCreator(m)
ac.convert(out_path, label=label, force=force, ampfactor=ampfactor)