Exemplos de phy_model_from_ks2_path em Python

Exemplo n.º 1

Arquivo: spikes.py Projeto: ekellbuch/ibllib

def ks2_to_alf(ks_path, out_path, ampfactor=1, label=None, force=True):
    """
    Convert Kilosort 2 output to ALF dataset for single probe data
    :param ks_path:
    :param out_path:
    :return:
    """
    m = ephysqc.phy_model_from_ks2_path(ks_path)
    ac = alf.EphysAlfCreator(m)
    ac.convert(out_path, label=label, force=force, ampfactor=ampfactor)

Exemplo n.º 2

def ks2_to_alf(ks_path, out_path, ampfactor=1, label=None, force=True):
    """
    Convert Kilosort 2 output to ALF dataset for single probe data
    :param ks_path:
    :param out_path:
    :return:

    TODO change/remove `ampfactor` after seeing how amplitudes are calculated by ks2
    """
    m = ephysqc.phy_model_from_ks2_path(ks_path)
    ephysqc.unit_metrics_ks2(ks_path, m, save=True)
    ac = alf.EphysAlfCreator(m)
    ac.convert(out_path, label=label, force=force, ampfactor=ampfactor)

Exemplo n.º 3

Arquivo: extract_files.py Projeto: int-brain-lab/iblapps

def ks2_to_alf(ks_path,
               bin_path,
               out_path,
               bin_file=None,
               ampfactor=1,
               label=None,
               force=True):
    """
    Convert Kilosort 2 output to ALF dataset for single probe data
    :param ks_path:
    :param bin_path: path of raw data
    :param out_path:
    :return:
    """
    m = ephysqc.phy_model_from_ks2_path(ks2_path=ks_path,
                                        bin_path=bin_path,
                                        bin_file=bin_file)
    ephysqc.spike_sorting_metrics_ks2(ks_path, m, save=True)
    ac = alf.EphysAlfCreator(m)
    ac.convert(out_path, label=label, force=force, ampfactor=ampfactor)