sys.path.append(settings.ALLCELLS_PATH) allcells = importlib.import_module(allcellsFileName) numOfCells = len( allcells.cellDB ) #number of cells that were clustered on all sessions clustered outputDir = '/home/languo/data/ephys/' + subject + '/' binWidth = 0.020 # Size of each bin in histogram in seconds clusNum = 12 #Number of clusters that Klustakwik speparated into numTetrodes = 8 #Number of tetrodes CellInfo = celldatabase.CellInfo #This is for creating subdatabase for responsive and modulated cells responsiveCellDB = celldatabase.CellDatabase() nonModulatedCellDB = celldatabase.CellDatabase() ################################################################################################ ##############################-----Minimum Requirements------################################### ################################################################################################ #qualityList = [1,6]#[1,4,5,6,7]#range(1,10) minZVal = 3.0 #maxISIviolation = 0.02 minPValue = 0.05 ################################################################################################ ################################################################################################ subject = allcells.cellDB[0].animalName behavSession = '' processedDir = os.path.join(outputDir, subject + '_stats')
''' List of all isolated units from one animal ''' from jaratoolbox import celldatabase eSession = celldatabase.EphysSessionInfo # Shorter name to simplify code cellDB = celldatabase.CellDatabase() ''' oneES = eSession(animalName='adap015', ephysSession = '2016-03-16_10-04-37', clustersEachTetrode = {1:range(1,13),2:range(1,13),3:range(1,13),4:range(1,13),5:range(1,13),6:range(1,13),7:range(1,13),8:range(1,13)}, behavSession = '20160316a') cellDB.append_session(oneES) oneES = eSession(animalName='adap015', #CRASHES BECAUSE SKIPPED TRIAL IS LAST TRIAL ephysSession = '2016-03-03_14-27-14', clustersEachTetrode = {1:range(1,13),2:range(1,13),3:range(1,13),4:range(1,13),5:range(1,13),6:range(1,13),7:range(1,13),8:range(1,13)}, behavSession = '20160303a') cellDB.append_session(oneES) oneES = eSession(animalName='adap015', ephysSession = '2016-02-23_14-12-34', clustersEachTetrode = {1:range(1,13),2:range(1,13),3:range(1,13),4:range(1,13),5:range(1,13),6:range(1,13),7:range(1,13),8:range(1,13)}, behavSession = '20160223a') cellDB.append_session(oneES) oneES = eSession(animalName='adap015', ephysSession = '2016-02-18_14-53-11', clustersEachTetrode = {1:range(1,13),2:range(1,13),3:range(1,13),4:range(1,13),5:range(1,13),6:range(1,13),7:range(1,13),8:range(1,13)}, behavSession = '20160218a')
sys.path.append(settings.ALLCELLS_PATH) allcells = importlib.import_module(allcellsFileName) numOfCells = len( allcells.cellDB ) #number of cells that were clustered on all sessions clustered outputDir = '/home/languo/data/ephys/' + subject + '/' binWidth = 0.020 # Size of each bin in histogram in seconds clusNum = 12 #Number of clusters that Klustakwik speparated into numTetrodes = 8 #Number of tetrodes CellInfo = celldatabase.CellInfo #This is for creating subdatabase for responsive and modulated cells allCellDB = celldatabase.CellDatabase() modulatedCellDB = celldatabase.CellDatabase() ################################################################################################ ##############################-----Minimum Requirements------################################### ################################################################################################ qualityList = [1, 6] #[1,4,5,6,7]#range(1,10) minZVal = 3.0 #maxISIviolation = 0.02 minPValue = 0.05 ################################################################################################ ################################################################################################ subject = allcells.cellDB[0].animalName behavSession = '' processedDir = os.path.join(outputDir, subject + '_stats')