def __init__(self, n = -1): """ Method: __init__ Constructor """ DataUnitSettings.__init__(self, n) self.set("Type", "Colocalization") self.registerCounted("ColocalizationLowerThreshold", 1) self.registerCounted("ColocalizationUpperThreshold", 1) self.register("ColocalizationDepth", 1) self.register("CalculateThresholds") for i in ["PValue", "RObserved", "RRandMean", "RRandSD", "NumIterations", "ColocCount", "Method", "PSF", "Ch1ThresholdMax", "Ch2ThresholdMax", "PearsonImageAbove", "PearsonImageBelow", "PearsonWholeImage", "M1", "M2", "ThresholdM1", "ThresholdM2", "Slope", "Intercept", "K1", "K2", "DiffStainIntCh1", "DiffStainIntCh2", "DiffStainVoxelsCh1", "DiffStainVoxelsCh2", "ColocAmount", "ColocPercent", "PercentageVolumeCh1", "PercentageTotalCh1", "PercentageTotalCh2", "PercentageVolumeCh2", "PercentageMaterialCh1", "PercentageMaterialCh2", "SumOverThresholdCh1", "SumOverThresholdCh2", "SumCh1", "SumCh2", "NonZeroCh1", "NonZeroCh2", "OverThresholdCh1", "OverThresholdCh2", "Ch2Lambda"]: self.register(i, 1) self.register("OutputScalar", 1) #self.register("ColocalizationColorTransferFunction",1) ctf = vtk.vtkColorTransferFunction() ctf.AddRGBPoint(0, 0, 0, 0) ctf.AddRGBPoint(255, 1.0, 1.0, 1.0) self.set("ColorTransferFunction", ctf) # This is used purely for remembering the ctf the user has set self.register("ColocalizationColorTransferFunction", 1)
def __init__(self, n = -1): """ Constructor """ DataUnitSettings.__init__(self, n) #self.registerCounted("MergingColorTransferFunction",1) self.set("Type", "Merging") self.registerCounted("IntensityTransferFunction", 1) self.register("AlphaTransferFunction", 1) self.register("AlphaMode") self.registerCounted("PreviewChannel") tf = vtkbxd.vtkIntensityTransferFunction() self.set("AlphaTransferFunction", tf) self.set("AlphaMode", [0, 0])
def __init__(self, n=-1): """ Constructor """ DataUnitSettings.__init__(self, n) #self.registerCounted("MergingColorTransferFunction",1) self.set("Type", "Merging") self.registerCounted("IntensityTransferFunction", 1) self.register("AlphaTransferFunction", 1) self.register("AlphaMode") self.registerCounted("PreviewChannel") tf = vtkbxd.vtkIntensityTransferFunction() self.set("AlphaTransferFunction", tf) self.set("AlphaMode", [0, 0])
def __init__(self, n=-1): """ Constructor """ DataUnitSettings.__init__(self, n) self.registerCounted("IntensityTransferFunctions", 1) self.register("InterpolationTimepoints", 1) self.set("Type", "Adjust") self.registerPrivate("ColorTransferFunction", 1) self.registerCounted("Source") self.register("VoxelSize") self.register("Spacing") #self.register("Origin") self.register("Dimensions") self.register("Type") self.register("Name") self.register("BitDepth") self.set("InterpolationTimepoints", [])
def __init__(self, n = -1): """ Constructor """ DataUnitSettings.__init__(self, n) self.registerCounted("IntensityTransferFunctions", 1) self.register("InterpolationTimepoints", 1) self.set("Type", "Adjust") self.registerPrivate("ColorTransferFunction", 1) self.registerCounted("Source") self.register("VoxelSize") self.register("Spacing") #self.register("Origin") self.register("Dimensions") self.register("Type") self.register("Name") self.register("BitDepth") self.set("InterpolationTimepoints", [])
def __init__(self, n=-1): """ Method: __init__ Constructor """ DataUnitSettings.__init__(self, n) self.set("Type", "Colocalization") self.registerCounted("ColocalizationLowerThreshold", 1) self.registerCounted("ColocalizationUpperThreshold", 1) self.register("ColocalizationDepth", 1) self.register("CalculateThresholds") for i in [ "PValue", "RObserved", "RRandMean", "RRandSD", "NumIterations", "ColocCount", "Method", "PSF", "Ch1ThresholdMax", "Ch2ThresholdMax", "PearsonImageAbove", "PearsonImageBelow", "PearsonWholeImage", "M1", "M2", "ThresholdM1", "ThresholdM2", "Slope", "Intercept", "K1", "K2", "DiffStainIntCh1", "DiffStainIntCh2", "DiffStainVoxelsCh1", "DiffStainVoxelsCh2", "ColocAmount", "ColocPercent", "PercentageVolumeCh1", "PercentageTotalCh1", "PercentageTotalCh2", "PercentageVolumeCh2", "PercentageMaterialCh1", "PercentageMaterialCh2", "SumOverThresholdCh1", "SumOverThresholdCh2", "SumCh1", "SumCh2", "NonZeroCh1", "NonZeroCh2", "OverThresholdCh1", "OverThresholdCh2", "Ch2Lambda" ]: self.register(i, 1) self.register("OutputScalar", 1) #self.register("ColocalizationColorTransferFunction",1) ctf = vtk.vtkColorTransferFunction() ctf.AddRGBPoint(0, 0, 0, 0) ctf.AddRGBPoint(255, 1.0, 1.0, 1.0) self.set("ColorTransferFunction", ctf) # This is used purely for remembering the ctf the user has set self.register("ColocalizationColorTransferFunction", 1)