def __init__(self, n = -1):
"""
Method: __init__
Constructor
"""
DataUnitSettings.__init__(self, n)
self.set("Type", "Colocalization")
self.registerCounted("ColocalizationLowerThreshold", 1)
self.registerCounted("ColocalizationUpperThreshold", 1)
self.register("ColocalizationDepth", 1)
self.register("CalculateThresholds")
for i in ["PValue", "RObserved", "RRandMean", "RRandSD",
"NumIterations", "ColocCount", "Method", "PSF",
"Ch1ThresholdMax", "Ch2ThresholdMax", "PearsonImageAbove",
"PearsonImageBelow", "PearsonWholeImage", "M1", "M2",
"ThresholdM1", "ThresholdM2", "Slope", "Intercept",
"K1", "K2", "DiffStainIntCh1", "DiffStainIntCh2",
"DiffStainVoxelsCh1", "DiffStainVoxelsCh2",
"ColocAmount", "ColocPercent", "PercentageVolumeCh1",
"PercentageTotalCh1", "PercentageTotalCh2",
"PercentageVolumeCh2", "PercentageMaterialCh1", "PercentageMaterialCh2",
"SumOverThresholdCh1", "SumOverThresholdCh2", "SumCh1", "SumCh2",
"NonZeroCh1", "NonZeroCh2", "OverThresholdCh1", "OverThresholdCh2", "Ch2Lambda"]:
self.register(i, 1)
self.register("OutputScalar", 1)
#self.register("ColocalizationColorTransferFunction",1)
ctf = vtk.vtkColorTransferFunction()
ctf.AddRGBPoint(0, 0, 0, 0)
ctf.AddRGBPoint(255, 1.0, 1.0, 1.0)
self.set("ColorTransferFunction", ctf)
# This is used purely for remembering the ctf the user has set
self.register("ColocalizationColorTransferFunction", 1)
def __init__(self, n = -1):
"""
Constructor
"""
DataUnitSettings.__init__(self, n)
#self.registerCounted("MergingColorTransferFunction",1)
self.set("Type", "Merging")
self.registerCounted("IntensityTransferFunction", 1)
self.register("AlphaTransferFunction", 1)
self.register("AlphaMode")
self.registerCounted("PreviewChannel")
tf = vtkbxd.vtkIntensityTransferFunction()
self.set("AlphaTransferFunction", tf)
self.set("AlphaMode", [0, 0])
def __init__(self, n=-1):
"""
Constructor
"""
DataUnitSettings.__init__(self, n)
#self.registerCounted("MergingColorTransferFunction",1)
self.set("Type", "Merging")
self.registerCounted("IntensityTransferFunction", 1)
self.register("AlphaTransferFunction", 1)
self.register("AlphaMode")
self.registerCounted("PreviewChannel")
tf = vtkbxd.vtkIntensityTransferFunction()
self.set("AlphaTransferFunction", tf)
self.set("AlphaMode", [0, 0])
def __init__(self, n=-1):
"""
Constructor
"""
DataUnitSettings.__init__(self, n)
self.registerCounted("IntensityTransferFunctions", 1)
self.register("InterpolationTimepoints", 1)
self.set("Type", "Adjust")
self.registerPrivate("ColorTransferFunction", 1)
self.registerCounted("Source")
self.register("VoxelSize")
self.register("Spacing")
#self.register("Origin")
self.register("Dimensions")
self.register("Type")
self.register("Name")
self.register("BitDepth")
self.set("InterpolationTimepoints", [])
def __init__(self, n = -1):
"""
Constructor
"""
DataUnitSettings.__init__(self, n)
self.registerCounted("IntensityTransferFunctions", 1)
self.register("InterpolationTimepoints", 1)
self.set("Type", "Adjust")
self.registerPrivate("ColorTransferFunction", 1)
self.registerCounted("Source")
self.register("VoxelSize")
self.register("Spacing")
#self.register("Origin")
self.register("Dimensions")
self.register("Type")
self.register("Name")
self.register("BitDepth")
self.set("InterpolationTimepoints", [])
def __init__(self, n=-1):
"""
Method: __init__
Constructor
"""
DataUnitSettings.__init__(self, n)
self.set("Type", "Colocalization")
self.registerCounted("ColocalizationLowerThreshold", 1)
self.registerCounted("ColocalizationUpperThreshold", 1)
self.register("ColocalizationDepth", 1)
self.register("CalculateThresholds")
for i in [
"PValue", "RObserved", "RRandMean", "RRandSD", "NumIterations",
"ColocCount", "Method", "PSF", "Ch1ThresholdMax",
"Ch2ThresholdMax", "PearsonImageAbove", "PearsonImageBelow",
"PearsonWholeImage", "M1", "M2", "ThresholdM1", "ThresholdM2",
"Slope", "Intercept", "K1", "K2", "DiffStainIntCh1",
"DiffStainIntCh2", "DiffStainVoxelsCh1", "DiffStainVoxelsCh2",
"ColocAmount", "ColocPercent", "PercentageVolumeCh1",
"PercentageTotalCh1", "PercentageTotalCh2",
"PercentageVolumeCh2", "PercentageMaterialCh1",
"PercentageMaterialCh2", "SumOverThresholdCh1",
"SumOverThresholdCh2", "SumCh1", "SumCh2", "NonZeroCh1",
"NonZeroCh2", "OverThresholdCh1", "OverThresholdCh2",
"Ch2Lambda"
]:
self.register(i, 1)
self.register("OutputScalar", 1)
#self.register("ColocalizationColorTransferFunction",1)
ctf = vtk.vtkColorTransferFunction()
ctf.AddRGBPoint(0, 0, 0, 0)
ctf.AddRGBPoint(255, 1.0, 1.0, 1.0)
self.set("ColorTransferFunction", ctf)
# This is used purely for remembering the ctf the user has set
self.register("ColocalizationColorTransferFunction", 1)
