def test_get_bwa_0_7_12(self):
content = "\nProgram: bwa (alignment via Burrows-Wheeler transformation)\nVersion: 0.7.12-r1039"
with mock.patch('subprocess.getoutput',
mock.Mock(return_value=content)):
self.assertEqual(
'0.7.12-r1039',
align.get_aligner_version(align.SUPPORTED_ALIGNER.BWA_MEM))
def test_get_blat_36x2(self):
content = 'blat - Standalone BLAT v. 36x2 fast sequence search command line tool\n'
with mock.patch('subprocess.getoutput',
mock.Mock(return_value=content)):
self.assertEqual(
'36x2',
align.get_aligner_version(align.SUPPORTED_ALIGNER.BLAT))
def test_get_bwa_0_7_15(self):
content = (
"\nProgram: bwa (alignment via Burrows-Wheeler transformation)\nVersion: 0.7.15-r1140"
)
with mock.patch('subprocess.getoutput', mock.Mock(return_value=content)):
assert align.get_aligner_version(align.SUPPORTED_ALIGNER.BWA_MEM) == '0.7.15-r1140'
def test_get_blat_36(self):
content = "blat - Standalone BLAT v. 36 fast sequence search command line tool"
with mock.patch('subprocess.getoutput', mock.Mock(return_value=content)):
assert align.get_aligner_version(align.SUPPORTED_ALIGNER.BLAT) == '36'