def linux_darwin_os_run():
# get the working directory path.
working_dir = os.path.abspath(os.path.dirname(__file__))
file_desc = ''
# if length of the argv is more than 1 then the argument is passed.
if len(sys.argv) > 1:
command_line_path = sys.argv[1]
# path should be at 1 because .py is at 0
# check the file.
# check_file will not assign a value unless it's correct.
file_desc = check_file(command_line_path)
elif local_file():
file_name = str(input("Specify the file name: "))
# check the file.
file_desc = check_file_lin(working_dir, file_name)
else: # executes when passing a full path.
# get the file.
file_name = find_file()
while not check_file(file_name):
# Try till we get it right.
file_name = find_file()
# Everything is fine.
# Let's open the file.
file_desc = file_name
# set the starting time for the timer
start_time = time.perf_counter()
# create the object
join_obj = JoinSequences(file_desc, working_dir)
# lets join the sequences
join_obj.join_seq()
# now create sort object
sort_obj = SortSequences(working_dir)
# this will find the joined file and create a new file for output
sort_obj.find_create_sort()
# when that's done we need to clean up
sort_obj.clean_up() # will delete joined file
# create splitting object
split_obj = SplitSequences()
# first find the file and replace it
split_obj.find_replace()
# then split them
split_obj.split_lines()
# then remove the unnecessary file
split_obj.clean_up()
# and move the file in the new directory
split_obj.move_file()
# create stats object
run_obj = RunStats(file_desc, split_obj.final_sorted_file)
# get stats
run_obj.get_seq_count()
# set the stop time
stop_time = time.perf_counter()
time_used = abs(int(start_time - stop_time))
m, s = divmod(time_used, 60)
h, m = divmod(m, 60)
str_result = "Run time: %d:%02d:%02d" % (h, m, s)
# get the run stats file.
run_stats_file = run_obj.stats_file
with open(run_stats_file, 'a') as result:
result.write(str_result)
def win32_os_run():
# global variable for main object.
global read_it
# String variable to hold path/name of the input file
file_desc = ''
# if length of the argv is more than 1 then the argument is passed.
if len(sys.argv) > 1:
command_line_path = sys.argv[1]
# path should be at 1 because .py is at 0
# check the file.
# check_file will not assign a value unless it's correct.
file_desc = check_file(command_line_path)
elif local_file():
file_name = str(input("Specify the file name: "))
# check the file.
file_desc = check_file(file_name)
else:
file_name = find_file()
while not check_file(file_name):
# Try till we get it right.
file_name = find_file()
# Everything is fine.
# Let's open the file.
file_desc = file_name
# set the starting time for the timer
start_time = time.perf_counter()
# create the object
read_it = LoadOnMemory(file_desc)
# lets do it
# check if user wants ordered or unordered.
if len(sys.argv) == 3:
if sys.argv[2] == '-o':
read_it.ordered()
else:
read_it.unordered()
else: # else unordered.
read_it.unordered()
# set the stop time
stop_time = time.perf_counter()
# get the time used
time_used = abs(int(start_time - stop_time))
# convert to minutes and hours
m, s = divmod(time_used, 60)
h, m = divmod(m, 60)
# create time string for output.
str_result = "Run time: %d:%02d:%02d" % (h, m, s)
# get the run stats file.
run_stats_file = read_it.stats_file
# write to the runstats file.
with open(run_stats_file, 'a') as result:
result.write(str_result)