def test_readpeaks(self):
import msproteomicstoolslib.format.mzXMLreader as mzXMLReader
reader = mzXMLReader.mzXMLReader(self.filename, True)
scan = reader.read_scan(5, True)
self.assertEqual( len(scan.peaks), 615)
self.assertAlmostEqual( scan.peaks[0].int, 271.413513184)
self.assertAlmostEqual( scan.peaks[0].mz, 350.3074646)
self.assertAlmostEqual( scan.max_peak().int, 10638.6044922)
self.assertAlmostEqual( scan.max_peak().mz, 390.929901123)
def test_readpeaks(self):
import msproteomicstoolslib.format.mzXMLreader as mzXMLReader
reader = mzXMLReader.mzXMLReader(self.filename, True)
scan = reader.read_scan(5, True)
self.assertEqual(len(scan.peaks), 615)
self.assertAlmostEqual(scan.peaks[0].int, 271.413513184)
self.assertAlmostEqual(scan.peaks[0].mz, 350.3074646)
self.assertAlmostEqual(scan.max_peak().int, 10638.6044922)
self.assertAlmostEqual(scan.max_peak().mz, 390.929901123)
def test_create_ms_rt_hashes(self):
reader = mzXMLReader.mzXMLReader(self.filename, False)
scans = reader.parse_scans()
reader.create_ms_rt_hashes(scans)
def test_parse_scans(self):
reader = mzXMLReader.mzXMLReader(self.filename, False)
scans = reader.parse_scans(ms2Only=False)
def test_readscan(self):
import msproteomicstoolslib.format.mzXMLreader as mzXMLReader
reader = mzXMLReader.mzXMLReader(self.filename, True)
scan = reader.read_scan(5)
def test_readfile(self):
reader = mzXMLReader.mzXMLReader(self.filename, True)
def test_create_ms_rt_hashes(self):
reader = mzXMLReader.mzXMLReader(self.filename, False)
scans = reader.parse_scans()
reader.create_ms_rt_hashes(scans)
def test_parse_scans(self):
reader = mzXMLReader.mzXMLReader(self.filename, False)
scans = reader.parse_scans(ms2Only=False)
def test_readscan(self):
import msproteomicstoolslib.format.mzXMLreader as mzXMLReader
reader = mzXMLReader.mzXMLReader(self.filename, True)
scan = reader.read_scan(5)
def test_readfile(self):
reader = mzXMLReader.mzXMLReader(self.filename, True)
