def test_to_networkx_invalid_mode_on_empty_network(self):
net = NiceCXNetwork()
try:
net.to_networkx(mode='someinvalidmode')
self.fail('Expected NDExError')
except NDExError as ne:
self.assertEqual('someinvalidmode is not a valid mode', str(ne))
def test_to_networkx_simple_graph_default_mode(self):
net = NiceCXNetwork(mode='default')
net.set_name('mynetwork')
net.create_node('node0')
net.create_node('node1')
net.create_edge(edge_source=0, edge_target=1)
g = net.to_networkx()
self.assertEqual(g.graph['name'], 'mynetwork')
self.assertEqual(2, len(g))
def test_to_networkx_legacy_mode_on_empty_network(self):
net = NiceCXNetwork()
g = net.to_networkx(mode='legacy')
self.assertEqual('{}', str(g.graph))
def test_to_networkx_none_mode_on_empty_network(self):
net = NiceCXNetwork()
g = net.to_networkx(mode=None)
self.assertEqual('{}', str(g.graph))
def test_to_networkx_no_arg_on_empty_network(self):
net = NiceCXNetwork()
g = net.to_networkx()
self.assertEqual('{}', str(g.graph))
# ##### set_opaque_aspect(aspect_name, aspect_elements)
# ##### set_opaque_aspect(aspect_name, aspect_elements)
# ##### get_opaque_aspect_names()
# ##### to_cx()
# ##### to_cx_stream()
# #### to_networkx()
# In[ ]:
NiceCX_creatures = NiceCXNetwork()
networkx_network = NiceCX_creatures.to_networkx()
# #### to_pandas_dataframe()
# In[ ]:
NiceCX_creatures = NiceCXNetwork()
pandas_network = NiceCX_creatures.to_pandas_dataframe()
# #### upload(ndex_server, username, password, update_uuid=None)
# In[ ]:
upload_message = NiceCX_creatures.upload_to("http://public.ndexbio.org",
"ENTER YOUR USER",
"ENTER YOUR PASSWORD")
