Python has_all_nonzero_section_lengths Exemples

Exemple #1

def test_nonzero_section_lengths_threshold():
    nrn = NEURONS['Neuron.swc']

    ids = nrn_chk.has_all_nonzero_section_lengths(nrn)
    nt.ok_(ids.status)
    nt.ok_(len(ids.info) == 0)

    ids = nrn_chk.has_all_nonzero_section_lengths(nrn, threshold=15.)
    nt.ok_(not ids.status)
    nt.assert_equal(len(ids.info), 84)

Exemple #2

Fichier : test_neuron_checks.py Projet : jdcourcol/NeuroM

def test_nonzero_section_lengths_threshold():
    nrn = NEURONS['Neuron.swc']

    ids = nrn_chk.has_all_nonzero_section_lengths(nrn)
    nt.ok_(ids.status)
    nt.ok_(len(ids.info) == 0)

    ids = nrn_chk.has_all_nonzero_section_lengths(nrn, threshold=15.)
    nt.ok_(not ids.status)
    nt.assert_equal(len(ids.info), 84)

Exemple #3

def test_nonzero_section_lengths_threshold():
    nrn = NEURONS['Neuron.swc']

    ids = nrn_chk.has_all_nonzero_section_lengths(nrn)
    assert ids.status
    assert len(ids.info) == 0

    ids = nrn_chk.has_all_nonzero_section_lengths(nrn, threshold=15.)
    assert not ids.status
    assert len(ids.info) == 84

Exemple #4

Fichier : test_neuron_checks.py Projet : jdcourcol/NeuroM

def test_nonzero_section_lengths_good_data():
    files = ['Neuron.swc',
             'Single_apical.swc',
             'Single_basal.swc',
             'Single_axon.swc',
             ]

    for i, nrn in enumerate(_pick(files)):
        ids = nrn_chk.has_all_nonzero_section_lengths(nrn)
        nt.ok_(ids.status)
        nt.ok_(len(ids.info) == 0)

Exemple #5

def test_nonzero_section_lengths_good_data():
    files = ['Neuron.swc',
             'Single_apical.swc',
             'Single_basal.swc',
             'Single_axon.swc',
             ]

    for i, nrn in enumerate(_pick(files)):
        ids = nrn_chk.has_all_nonzero_section_lengths(nrn)
        assert ids.status
        assert len(ids.info) == 0

Exemple #6

def test_nonzero_section_lengths_bad_data():
    nrn = NEURONS['Neuron_zero_length_sections.swc']

    ids = nrn_chk.has_all_nonzero_section_lengths(nrn)
    nt.ok_(not ids.status)
    nt.assert_equal(ids.info, [15])

Exemple #7

Fichier : test_neuron_checks.py Projet : jdcourcol/NeuroM

def test_nonzero_section_lengths_bad_data():
    nrn = NEURONS['Neuron_zero_length_sections.swc']

    ids = nrn_chk.has_all_nonzero_section_lengths(nrn)
    nt.ok_(not ids.status)
    nt.assert_equal(ids.info, [15])

Exemple #8

Fichier : benchmarks.py Projet : BlueBrain/NeuroM

 def time_has_all_nonzero_section_lengths(self):
     nc.has_all_nonzero_section_lengths(self.neuron, threshold=0.0)

Exemple #9

Fichier : benchmarks.py Projet : yamagatm/NeuroM

 def time_has_all_nonzero_section_lengths(self):
     nc.has_all_nonzero_section_lengths(self.neuron, threshold=0.0)

Exemple #10

def test_nonzero_section_lengths_bad_data():
    nrn = NEURONS['Neuron_zero_length_sections.swc']

    ids = nrn_chk.has_all_nonzero_section_lengths(nrn)
    assert not ids.status
    assert ids.info == [13]