コード例 #1
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def test_nonzero_section_lengths_threshold():
    nrn = NEURONS['Neuron.swc']

    ids = nrn_chk.has_all_nonzero_section_lengths(nrn)
    nt.ok_(ids.status)
    nt.ok_(len(ids.info) == 0)

    ids = nrn_chk.has_all_nonzero_section_lengths(nrn, threshold=15.)
    nt.ok_(not ids.status)
    nt.assert_equal(len(ids.info), 84)
コード例 #2
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def test_nonzero_section_lengths_threshold():
    nrn = NEURONS['Neuron.swc']

    ids = nrn_chk.has_all_nonzero_section_lengths(nrn)
    nt.ok_(ids.status)
    nt.ok_(len(ids.info) == 0)

    ids = nrn_chk.has_all_nonzero_section_lengths(nrn, threshold=15.)
    nt.ok_(not ids.status)
    nt.assert_equal(len(ids.info), 84)
コード例 #3
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def test_nonzero_section_lengths_threshold():
    nrn = NEURONS['Neuron.swc']

    ids = nrn_chk.has_all_nonzero_section_lengths(nrn)
    assert ids.status
    assert len(ids.info) == 0

    ids = nrn_chk.has_all_nonzero_section_lengths(nrn, threshold=15.)
    assert not ids.status
    assert len(ids.info) == 84
コード例 #4
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def test_nonzero_section_lengths_good_data():
    files = ['Neuron.swc',
             'Single_apical.swc',
             'Single_basal.swc',
             'Single_axon.swc',
             ]

    for i, nrn in enumerate(_pick(files)):
        ids = nrn_chk.has_all_nonzero_section_lengths(nrn)
        nt.ok_(ids.status)
        nt.ok_(len(ids.info) == 0)
コード例 #5
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def test_nonzero_section_lengths_good_data():
    files = ['Neuron.swc',
             'Single_apical.swc',
             'Single_basal.swc',
             'Single_axon.swc',
             ]

    for i, nrn in enumerate(_pick(files)):
        ids = nrn_chk.has_all_nonzero_section_lengths(nrn)
        assert ids.status
        assert len(ids.info) == 0
コード例 #6
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def test_nonzero_section_lengths_bad_data():
    nrn = NEURONS['Neuron_zero_length_sections.swc']

    ids = nrn_chk.has_all_nonzero_section_lengths(nrn)
    nt.ok_(not ids.status)
    nt.assert_equal(ids.info, [15])
コード例 #7
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def test_nonzero_section_lengths_bad_data():
    nrn = NEURONS['Neuron_zero_length_sections.swc']

    ids = nrn_chk.has_all_nonzero_section_lengths(nrn)
    nt.ok_(not ids.status)
    nt.assert_equal(ids.info, [15])
コード例 #8
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ファイル: benchmarks.py プロジェクト: BlueBrain/NeuroM 
 def time_has_all_nonzero_section_lengths(self):
     nc.has_all_nonzero_section_lengths(self.neuron, threshold=0.0)
コード例 #9
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ファイル: benchmarks.py プロジェクト: yamagatm/NeuroM 
 def time_has_all_nonzero_section_lengths(self):
     nc.has_all_nonzero_section_lengths(self.neuron, threshold=0.0)
コード例 #10
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def test_nonzero_section_lengths_bad_data():
    nrn = NEURONS['Neuron_zero_length_sections.swc']

    ids = nrn_chk.has_all_nonzero_section_lengths(nrn)
    assert not ids.status
    assert ids.info == [13]