def test_fhs():
fhs = "FHS|^~\&|filesendingapp^FSAID^ISO|"\
"filesendingfacility^FSFID^ISO|filereceivingapp^FRAID^ISO|"\
"filereceivingfacility^FRFID^ISO|20211209113014||||filecontrolid"
components_to_hide = (
"filesendingapp", # FHS-3.1
"FSAID", # FHS-3.2
"filesendingfacility", # FHS-4.1
"FSFID", # FHS-4.2
"filereceivingapp", # FHS-5.1
"FRAID", # FHS-5.2
"filereceivingfacility", # FHS-6.1
"FRFID", # FHS-6.2
"20211209113014", # FHS-7.1
"filecontrolid", # FHS-11.1
)
# test the test; confirm test string has what we're looking to change
for component in components_to_hide:
assert(fhs.find(component) > 0)
mbds_anon = MBDS_anon(fhs)
result = mbds_anon.anonymize()
# confirm all required fields have been anonymized
for component in components_to_hide:
assert(result.find(component) == -1)
def test_msh():
msh = "MSH|^~\&|sendingapp^SAID|sendingfacility^SFID^NPI|"\
"receivingapp^RAID^ISO|receivingfacility^RFID^ISO|"\
"30301210090814||ADT^A08^ADT_A01|"\
"1234567890303012100908143982|P|2.5|||||||||Biosurveillance-1.0"
components_to_hide = (
"sendingapp", # MSH-3.1
"SAID", # MSH-3.2
"sendingfacility", # MSH-4.1
"SFID", # MSH-4.2
"receivingapp", # MSH-5.1
"RAID", # MSH-5.2
"eceivingfacility", # MSH-6.1
"RFID", # MSH-6.2
"303012100908", # MSH-7.1
"1234567890303012100908143982", # MSH-10.1
)
# test the test; confirm test string has what we're looking to change
for component in components_to_hide:
assert(msh.find(component) > 0)
mbds_anon = MBDS_anon(msh)
result = mbds_anon.anonymize()
# confirm all required fields have been anonymized
for component in components_to_hide:
assert(result.find(component) == -1)
def test_pv1():
pv1 = "MSH|^~\&|sendingapp^SAID|sendingfacility^SFID^NPI|"\
"receivingapp^RAID^ISO|receivingfacility^RFID^ISO|"\
"30301210090814||ADT^A08^ADT_A01|"\
"1234567890303012100908143982|P|2.5|||||||||Biosurveillance-1.0"\
"\rPV1|1|E^Emergency^HL70004^E^^L|"\
"^patientroom^bed^patientfacility^status^type^building^floor|"\
"2^Urgent^UB04FL14^UR^^L|||||||||||||||||||||||||||"\
"|||||||||||||303002091749|303003091749"
components_to_hide = (
"patientroom", # PV1-3.1
"patientfacility", # PV1-3.4
"building", # PV1-3.7
"floor", # PV1-3.8
"303002091749", # PV1-44.1
"303003091749", # PV1-45.1
)
# test the test; confirm test string has what we're looking to change
for component in components_to_hide:
assert(pv1.find(component) > 0)
mbds_anon = MBDS_anon(pv1)
result = mbds_anon.anonymize()
# confirm all required fields have been anonymized
for component in components_to_hide:
assert(result.find(component) == -1)
def test_spm():
spm = "MSH|^~\&|sendingapp^SAID|sendingfacility^SFID^NPI|"\
"receivingapp^RAID^ISO|receivingfacility^RFID^ISO|"\
"30301210090814||ADT^A08^ADT_A01|"\
"1234567890303012100908143982|P|2.5|||||||||Biosurveillance-1.0"\
"\rSPM|1|^fillerid||"\
"309051001^"\
"Body fluid sample (specimen)^SN^PARFLD^Paracentesis Fluid^L|"\
"|||||||||||||30301210090814"
components_to_hide = (
"fillerid", # SPM-2.2
"30301210090814", # SPM-18
)
# test the test; confirm test string has what we're looking to change
for component in components_to_hide:
assert(spm.find(component) > 0)
mbds_anon = MBDS_anon(spm)
result = mbds_anon.anonymize()
# confirm all required fields have been anonymized
for component in components_to_hide:
assert(result.find(component) == -1)
def test_pid():
pid = "MSH|^~\&|sendingapp^SAID|sendingfacility^SFID^NPI|"\
"receivingapp^RAID^ISO|receivingfacility^RFID^ISO|"\
"30301210090814||ADT^A08^ADT_A01|"\
"1234567890303012100908143982|P|2.5|||||||||Biosurveillance-1.0"\
"\rPID|1||patientID^^^&assigningID&ISO||\"\"|"\
"|213005|M||"\
"1002-5^American Indian or Alaska Native^^6^^L|"\
"^^^WA^66123|FER-WA||||||account^^^&assigningauthority"
components_to_hide = (
"patientID", # PID-3.1
"assigningID", # PID-3.4
"213005", # PID-7.1
"66123", # PID-11.5
"account", # PID-18.1
"assigningauthority", # PID-18.4
)
# test the test; confirm test string has what we're looking to change
for component in components_to_hide:
assert(pid.find(component) > 0)
mbds_anon = MBDS_anon(pid)
result = mbds_anon.anonymize()
# confirm all required fields have been anonymized
for component in components_to_hide:
assert(result.find(component) == -1)
def test_bhs():
bhs = "BHS|^~\&|batchsendingapp^BSAID^ISO|"\
"batchsendingfacility^BSFID^ISO|"\
"batchreceivingapp^BRAID^ISO|"\
"batchreceivingfacility^BRFID^ISO|20410209150319||||"\
"batchcontrolid"
components_to_hide = (
"batchsendingapp", # BHS-3.1
"BSAID", # BHS-3.2
"batchsendingfacility", # BHS-4.1
"BSFID", # BHS-4.2
"batchreceivingapp", # BHS-5.1
"BRAID", # BHS-5.2
"batchreceivingfacility", # BHS-6.1
"BRFID", # BHS-6.2
"20410209150319", # BHS-7.1
"batchcontrolid", # BHS-11.1
)
# test the test; confirm test string has what we're looking to change
for component in components_to_hide:
assert(bhs.find(component) > 0)
mbds_anon = MBDS_anon(bhs)
result = mbds_anon.anonymize()
# confirm all required fields have been anonymized
for component in components_to_hide:
assert(result.find(component) == -1)
def test_nte():
nte = "MSH|^~\&|sendingapp^SAID|sendingfacility^SFID^NPI|"\
"receivingapp^RAID^ISO|receivingfacility^RFID^ISO|"\
"30301210090814||ADT^A08^ADT_A01|"\
"1234567890303012100908143982|P|2.5|||||||||Biosurveillance-1.0"\
"\rNTE|1||note text"
mbds_anon = MBDS_anon(nte)
result = mbds_anon.anonymize()
assert(result.find("note text") == -1)
def test_reentrant():
"same call twice shouldn't return same result"
msh = "MSH|^~\&|sendingapp^SAID|sendingfacility^SFID^NPI|"\
"receivingapp^RAID^ISO|receivingfacility^RFID^ISO|"\
"303012100908||ADT^A08^ADT_A01|"\
"1234567890303012100908143982|P|2.5|||||||||Biosurveillance-1.0"
mbds_anon = MBDS_anon(msh)
result = mbds_anon.anonymize()
result2 = mbds_anon.anonymize()
assert(result == result2)
def test_orc():
orc = "MSH|^~\&|sendingapp^SAID|sendingfacility^SFID^NPI|"\
"receivingapp^RAID^ISO|receivingfacility^RFID^ISO|"\
"30301210090814||ADT^A08^ADT_A01|"\
"1234567890303012100908143982|P|2.5|||||||||Biosurveillance-1.0"\
"\rORC|NW|613395|19950914:C00094R||||||199509141051"
mbds_anon = MBDS_anon(orc)
result = mbds_anon.anonymize()
assert(result.find("199509") == -1)
def test_dg1():
dg1 = "MSH|^~\&|sendingapp^SAID|sendingfacility^SFID^NPI|"\
"receivingapp^RAID^ISO|receivingfacility^RFID^ISO|"\
"30301210090814||ADT^A08^ADT_A01|"\
"1234567890303012100908143982|P|2.5|||||||||Biosurveillance-1.0"\
"\rDG1|1||592.0^CALCULUS OF KIDNEY^I9||303012091749"\
"|A^Admitting^HL70052^A^^L|||||||||1"
mbds_anon = MBDS_anon(dg1)
result = mbds_anon.anonymize()
assert(result.find("303012091749") == -1)
def test_obx():
obx = "MSH|^~\&|sendingapp^SAID|sendingfacility^SFID^NPI|"\
"receivingapp^RAID^ISO|receivingfacility^RFID^ISO|"\
"30301210090814||ADT^A08^ADT_A01|"\
"1234567890303012100908143982|P|2.5|||||||||Biosurveillance-1.0"\
"\rOBX|4|TX|41852-5^Microorganism or agent identified:"\
"Prid:Pt:XXX:Nom:^LN^RL^DFA^L|4.1|"\
"too many dates and addresses||||||F||||^^^labcode^^L"
mbds_anon = MBDS_anon(obx)
result = mbds_anon.anonymize()
assert(result.find("too many dates and addresses") == -1)
assert(result.find("labcode") == -1)
def test_evn():
evn = "MSH|^~\&|sendingapp^SAID|sendingfacility^SFID^NPI|"\
"receivingapp^RAID^ISO|receivingfacility^RFID^ISO|"\
"30301210090814||ADT^A08^ADT_A01|"\
"1234567890303012100908143982|P|2.5|||||||||Biosurveillance-1.0"\
"\rEVN|A01|303012091749|30300706172800||||"\
"eventfacility^EFID^NPI"
mbds_anon = MBDS_anon(evn)
result = mbds_anon.anonymize()
assert(result.find("303012091749") == -1)
assert(result.find("30300706172800") == -1)
assert(result.find("eventfacility") == -1)
assert(result.find("EFID") == -1)
def test_obr():
obr = "MSH|^~\&|sendingapp^SAID|sendingfacility^SFID^NPI|"\
"receivingapp^RAID^ISO|receivingfacility^RFID^ISO|"\
"30301210090814||ADT^A08^ADT_A01|"\
"1234567890303012100908143982|P|2.5|||||||||Biosurveillance-1.0"\
"\rOBR|1|placerorderno^placerid^placeruid|"\
"fillerorderno^fillerid^filleruid|"\
"610-6^Bacteria identified:Prid:Pt:Body fld:Nom:Aerobic culture"\
"^LN^CFL^Culture Body Fluid^L||30301210090814|"\
"303008091215|303008091218||||||303008091310|"\
"&&&PELVIS&Pelvis&L|||||||303008091322||MB|A"
components_to_hide = (
"placerorderno", # OBR-2.1
"placerid", # OBR-2.2
"placeruid", # OBR-2.3
"fillerorderno", # OBR-3.1
"fillerid", # OBR-3.2
"filleruid", # OBR-3.3
"30301210090814", # OBR-6.1
"303008091215", # OBR-7.1
"303008091218", # OBR-8.1
"303008091310", # OBR-14.1
"303008091322", # OBR-22.1
)
# test the test; confirm test string has what we're looking to change
for component in components_to_hide:
assert(obr.find(component) > 0)
mbds_anon = MBDS_anon(obr)
result = mbds_anon.anonymize()
# confirm all required fields have been anonymized
for component in components_to_hide:
assert(result.find(component) == -1)