def textfeat_Extension(magick=False):
import pkgconfig
libs = ['opencv', 'libxml-2.0', 'Magick++']
compile_args = ['-std=c++11']
link_args = []
for lib in libs:
if not pkgconfig.exists(lib):
raise FileNotFoundError('pkgconfig did not find ' + lib)
compile_args += pkgconfig.cflags(lib).split()
link_args += pkgconfig.libs(lib).split()
#compile_args += pkgconfig.cflags('opencv').split()
#cvre = re.compile('^-L|^-lopencv_core|^-lopencv_imgproc|^-lopencv_imgcodecs|^-lopencv_flann')
#link_args += [x for x in pkgconfig.libs('opencv').split() if cvre.match(x)]
cvinc = pkgconfig.cflags('opencv').split()[0].rsplit('/opencv', 1)[0]
defimage = '__PAGEXML_IMG_MAGICK__' if magick else '__PAGEXML_IMG_CV__'
pageimage = 'Magick::Image' if magick else 'cv::Mat'
define_macros = [(defimage, ''), ('__PAGEXML_MAGICK__', '')]
swig_opts = [
'-D' + defimage, '-DPageImage=' + pageimage, '-D__PAGEXML_MAGICK__'
]
print('textfeat_Extension configured with ' + defimage)
return Extension(
'_textfeat',
define_macros=define_macros + [('SWIG_PYTHON_SILENT_MEMLEAK', '')],
extra_compile_args=compile_args,
extra_link_args=link_args,
swig_opts=swig_opts + [cvinc, '-modern', '-keyword', '-c++'],
sources=[
'textfeat/TextFeatExtractor.i', 'textfeat/TextFeatExtractor.cc',
'textfeat/intimg.cc', 'textfeat/mem.cc'
])
def pagexml_Extension(magick):
import pkgconfig
libs = ['opencv', 'libxml-2.0', 'libxslt', 'gdal']
if magick:
libs += ['Magick++']
compile_args = ['-std=c++11']
link_args = []
for lib in libs:
if not pkgconfig.exists(lib):
raise FileNotFoundError('pkgconfig did not find ' + lib)
compile_args += pkgconfig.cflags(lib).split()
link_args += pkgconfig.libs(lib).split()
#compile_args += pkgconfig.cflags('opencv').split()
#cvre = re.compile('^-L|^-lopencv_core|^-lopencv_imgproc|^-lopencv_imgcodecs|^-lopencv_highgui')
#link_args += [x for x in pkgconfig.libs('opencv').split() if cvre.match(x)]
cvinc = pkgconfig.cflags('opencv').split()[0].rsplit('/opencv', 1)[0]
defimage = '__PAGEXML_IMG_MAGICK__' if magick else '__PAGEXML_IMG_CV__'
pageimage = 'Magick::Image' if magick else 'cv::Mat'
define_macros = [('__PAGEXML_OGR__', ''), (defimage, '')
] + ([('__PAGEXML_MAGICK__', '')] if magick else [])
swig_opts = [
'-D__PAGEXML_OGR__', '-D' + defimage, '-DPageImage=' + pageimage
] + (['-D__PAGEXML_MAGICK__'] if magick else [])
print('pagexml_Extension configured with ' + defimage)
return Extension(
'_pagexml',
define_macros=define_macros + [('SWIG_PYTHON_SILENT_MEMLEAK', '')],
extra_compile_args=compile_args,
extra_link_args=link_args,
swig_opts=swig_opts +
[cvinc, '-I./opencv-swig/lib', '-modern', '-keyword', '-w511', '-c++'],
sources=['pagexml/PageXML.i', 'pagexml/PageXML.cc'])
def test_cflags():
flags = pkgconfig.cflags(PACKAGE_NAME)
for flag in flags.split(' '):
assert flag in ('-DGSEAL_ENABLE', '-I/usr/include/gtk-3.0')
with pytest.raises(pkgconfig.PackageNotFoundError):
pkgconfig.cflags('doesnotexist')
def test_cflags():
flags = pkgconfig.cflags(PACKAGE_NAME)
for flag in flags.split(' '):
assert flag in ('-DGSEAL_ENABLE', '-I/usr/include/gtk-3.0')
with pytest.raises(pkgconfig.PackageNotFoundError):
pkgconfig.cflags('doesnotexist')
def get_cflags(package):
includes = pkgconfig.cflags(package)
if not includes:
raise RuntimeError('Unable to find pkgconfig cflags'
' for {}'.format(package))
includes = includes.replace('-I', '').split(' ')
return includes
def get_blas_config() -> PackageInfo:
"""
Find CBLAS-compatible BLAS
:return:
blas related package information
"""
blaspkgcfg = {
'include_dirs': [],
'library_dirs': [],
'libraries': [],
'define_macros': [],
'extra_compile_args': [],
'extra_link_args': []
}
# Check environment variables
if 'BLAS_CFLAGS' in os.environ:
blaspkgcfg['extra_compile_args'].extend(
shlex.split(os.environ['BLAS_CFLAGS']))
if 'BLAS_LIBS' in os.environ:
blaspkgcfg['extra_link_args'].extend(
shlex.split(os.environ['BLAS_LIBS']))
if 'BLAS_CFLAGS' in os.environ or 'BLAS_LIBS' in os.environ:
# If options have been provided by the user, we don't try to detect
# anything by ourselves
return blaspkgcfg
# Try environment modules
# MKL
if 'MKLROOT' in os.environ:
if 'MKL_INC' in os.environ:
blaspkgcfg['extra_compile_args'].extend(
shlex.split(os.environ['MKL_INC']))
if 'MKL_LIB' in os.environ:
blaspkgcfg['extra_link_args'].extend(
shlex.split(os.environ['MKL_LIB']))
blaspkgcfg['define_macros'].append(('AMICI_BLAS_MKL', None), )
return blaspkgcfg
# Try pkgconfig
if pkgconfig:
for blas_name in ['cblas', 'openblas']:
if pkgconfig.exists(blas_name):
blaspkgcfg = pkgconfig.parse(blas_name)
blaspkgcfg['extra_compile_args'] = [
pkgconfig.cflags(blas_name)
]
blaspkgcfg['extra_link_args'] = [pkgconfig.libs(blas_name)]
return blaspkgcfg
# If none of the previous worked, fall back to libcblas in default paths
blaspkgcfg['libraries'] = ['cblas']
return blaspkgcfg
def pkg_include_dirs(pkg_name):
includes = []
for dir in pkgconfig.cflags(pkg_name).split(" "):
if dir[:2] == "-I":
includes.append(dir[2:])
else:
includes.append(dir)
return includes
def cython_aliases():
"""
Return the aliases for compiling Cython code. These aliases are
macros which can occur in ``# distutils`` headers.
EXAMPLES::
sage: from sage.env import cython_aliases
sage: cython_aliases()
{...}
sage: sorted(cython_aliases().keys())
['ARB_LIBRARY',
'FFLASFFPACK_CFLAGS',
'FFLASFFPACK_INCDIR',
'FFLASFFPACK_LIBDIR',
'FFLASFFPACK_LIBRARIES',
'GIVARO_CFLAGS',
'GIVARO_INCDIR',
'GIVARO_LIBDIR',
'GIVARO_LIBRARIES',
'GSL_CFLAGS',
'GSL_INCDIR',
'GSL_LIBDIR',
'GSL_LIBRARIES',
'LINBOX_CFLAGS',
'LINBOX_INCDIR',
'LINBOX_LIBDIR',
'LINBOX_LIBRARIES',
'SINGULAR_CFLAGS',
'SINGULAR_INCDIR',
'SINGULAR_LIBDIR',
'SINGULAR_LIBRARIES']
"""
import pkgconfig
aliases = {}
for lib in ['fflas-ffpack', 'givaro', 'gsl', 'linbox', 'Singular']:
var = lib.upper().replace("-", "") + "_"
aliases[var + "CFLAGS"] = pkgconfig.cflags(lib).split()
pc = pkgconfig.parse(lib)
# INCDIR should be redundant because the -I options are also
# passed in CFLAGS
aliases[var + "INCDIR"] = pc['include_dirs']
aliases[var + "LIBDIR"] = pc['library_dirs']
aliases[var + "LIBRARIES"] = pc['libraries']
# LinBox needs special care because it actually requires C++11 with
# GNU extensions: -std=c++11 does not work, you need -std=gnu++11
# (this is true at least with GCC 7.2.0).
#
# Further, note that LinBox does not add any C++11 flag in its .pc
# file (possibly because of confusion between CFLAGS and CXXFLAGS?).
# This is not a problem in practice since LinBox depends on
# fflas-ffpack and fflas-ffpack does add such a C++11 flag.
aliases["LINBOX_CFLAGS"].append("-std=gnu++11")
aliases["ARB_LIBRARY"] = os.environ.get('SAGE_ARB_LIBRARY', 'arb')
return aliases
def __init__(self):
found_paskages = self._find_in_tree(root=os.path.dirname(cv2.__file__))
if found_paskages:
PKG_CONFIG_PATH = found_paskages[0][1]
self._pkg_config_name = found_paskages[0][0]
os.environ['PKG_CONFIG_PATH'] = PKG_CONFIG_PATH
self._pkg_config_path = PKG_CONFIG_PATH
self._cflags = pkgconfig.cflags(self._pkg_config_name)
self._libs = pkgconfig.libs(self._pkg_config_name)
def cython_aliases():
"""
Return the aliases for compiling Cython code. These aliases are
macros which can occur in ``# distutils`` headers.
EXAMPLES::
sage: from sage.env import cython_aliases
sage: cython_aliases()
{...}
sage: sorted(cython_aliases().keys())
['FFLASFFPACK_CFLAGS',
'FFLASFFPACK_INCDIR',
'FFLASFFPACK_LIBDIR',
'FFLASFFPACK_LIBRARIES',
'GIVARO_CFLAGS',
'GIVARO_INCDIR',
'GIVARO_LIBDIR',
'GIVARO_LIBRARIES',
'GSL_CFLAGS',
'GSL_INCDIR',
'GSL_LIBDIR',
'GSL_LIBRARIES',
'LINBOX_CFLAGS',
'LINBOX_INCDIR',
'LINBOX_LIBDIR',
'LINBOX_LIBRARIES',
'SINGULAR_CFLAGS',
'SINGULAR_INCDIR',
'SINGULAR_LIBDIR',
'SINGULAR_LIBRARIES']
"""
import pkgconfig
aliases = {}
for lib in ['fflas-ffpack', 'givaro', 'gsl', 'linbox', 'Singular']:
var = lib.upper().replace("-", "") + "_"
aliases[var + "CFLAGS"] = pkgconfig.cflags(lib).split()
pc = pkgconfig.parse(lib)
# INCDIR should be redundant because the -I options are also
# passed in CFLAGS
aliases[var + "INCDIR"] = pc['include_dirs']
aliases[var + "LIBDIR"] = pc['library_dirs']
aliases[var + "LIBRARIES"] = pc['libraries']
# LinBox needs special care because it actually requires C++11 with
# GNU extensions: -std=c++11 does not work, you need -std=gnu++11
# (this is true at least with GCC 7.2.0).
#
# Further, note that LinBox does not add any C++11 flag in its .pc
# file (possibly because of confusion between CFLAGS and CXXFLAGS?).
# This is not a problem in practice since LinBox depends on
# fflas-ffpack and fflas-ffpack does add such a C++11 flag.
aliases["LINBOX_CFLAGS"].append("-std=gnu++11")
return aliases
def flags_from_config(config, path_resolver):
flags = []
for package in config.get('pkg_config_packages') or []:
flags.extend(pkgconfig.cflags(package).split(' '))
extra_flags = config.get('extra_c_flags') or []
for flag in extra_flags:
flags.extend([f for f in flag.split()])
return flags
def flags_from_config(config):
flags = []
for package in config.get('pkg_config_packages') or []:
flags.extend(pkgconfig.cflags(package).split(' '))
extra_flags = config.get('extra_c_flags') or []
for flag in extra_flags:
flags.extend([f for f in flag.split()])
return flags
def get_include_paths(library_names):
if not isinstance(library_names, list):
library_names = [library_names]
# find search paths for libraries and header via pkg-config
header_dirs = set()
# for manually installed packages, env var PKG_CONFIG_PATH might need to be changed
for library_name in library_names:
os.environ["PKG_CONFIG_ALLOW_SYSTEM_CFLAGS"] = "1"
cflags = pkgconfig.cflags(library_name)
header_dirs.update(re.findall(r"(?<=-I)\S+", cflags))
return header_dirs
def get_motr_cflags():
try:
# Motr devel rpm takes precedence over M0_SRC_DIR
if pkgconfig.exists('motr'):
return pkgconfig.cflags('motr').split()
except EnvironmentError:
# fall back to M0_SRC_DIR handling if `pkg-config` is not available in
# the system
pass
return [
'-g', '-Werror', '-Wall', '-Wextra', '-Wno-attributes',
'-Wno-unused-parameter'
]
def get_include_dirs():
import pkgconfig
import numpy
if not pkgconfig.exists('eigen3'):
raise Exception(
'Missing `eigen3` library. Please install it using the package manager of your operating system'
)
np_include_dir = numpy.get_include()
# We have to throw away the `-I` part of the `pkgconfig` output
# because it is not part of the include directory.
eigen3_include_dir = pkgconfig.cflags('eigen3')[2:]
return [np_include_dir, eigen3_include_dir]
def get_host_cflags():
"""
Get compilation cflags.
Returns:
str[]: List of compiler flags.
"""
return [
"-x",
"c++",
"-std=c++11",
# Workaround for issue with libc++
"-D_GLIBCXX_USE_CXX11_ABI=0",
"-I" + os.path.join(vp.computecpp_prefix, "include"),
"-I" + resource_filename(__name__, os.path.join("lib", "include")),
] + pkgconfig.cflags("opencv").split()
def flags_from_config(config, path_resolver):
flags = []
for package in config.get('pkg_config_packages') or []:
flags.extend(pkgconfig.cflags(package).split(' '))
extra_flags = config.get('extra_c_flags') or []
for extra_flag in extra_flags:
extra_flag = extra_flag.strip()
if extra_flag.startswith('-I'):
path = extra_flag.split('-I')[1]
flags.append('-I%s' % path_resolver.resolve_config_path(path))
else:
flags.append(extra_flag)
return flags
def getBlasConfig():
"""
Find CBLAS-compatible BLAS
Arguments:
Returns:
Raises:
"""
blaspkgcfg = {'include_dirs': [],
'library_dirs': [],
'libraries': [],
'define_macros': [],
'extra_compile_args': [],
'extra_link_args': []
}
if platform.system() in ['Linux', 'Darwin']:
blaspkgcfg['libraries'] = ['cblas']
if pkgconfig:
if pkgconfig.exists('cblas'):
blaspkgcfg = pkgconfig.parse('cblas')
blaspkgcfg['extra_compile_args'] = [pkgconfig.cflags('cblas')]
blaspkgcfg['extra_link_args'] = [pkgconfig.libs('cblas')]
if 'BLAS_CFLAGS' in os.environ:
blaspkgcfg['extra_compile_args'].extend(
shlex.split(os.environ['BLAS_CFLAGS'])
)
if 'BLAS_LIBS' in os.environ:
blaspkgcfg['extra_link_args'].extend(
shlex.split(os.environ['BLAS_LIBS'])
)
return blaspkgcfg
def check_gromacs_dirs():
''' Check for GROMACS directories and flags
'''
import pkgconfig
# If gromacs not in pkgconfig, return from here
if not pkgconfig.exists('libgromacs'):
return
out = dict()
cppflags_t = pkgconfig.re.split('\s+', pkgconfig.cflags('libgromacs'))
out['cppflags'] = []
out['ldflags'] = []
out['include'] = []
out['lib_dirs'] = []
out['libs'] = []
# Extract include directory and CXXFLAGS
for flags in cppflags_t:
if '-I' in flags:
out['include'].append(flags[2:])
else:
out['cppflags'].append(flags)
# Extract lib directory and LDFLAGS
ldflags_t = pkgconfig.re.split('\s+', pkgconfig.libs('libgromacs'))
for flags in ldflags_t:
if '-L' in flags:
out['lib_dirs'].append(flags[2:])
elif '-l' in flags:
out['libs'].append(flags[2:])
else:
out['ldflags'].append(flags)
if '-fopenmp' not in out['ldflags']:
out['ldflags'].append('-fopenmp')
return out
def __init__(self, mujoco_path):
self.mujoco_path = mujoco_path
python_version = str(sys.version_info.major) + str(
sys.version_info.minor)
self.version = '%s_%s_%s' % (get_version(), python_version,
self.build_base())
self.extension = Extension(
'mujoco_py.cymj',
sources=[join(self.CYMJ_DIR_PATH, "cymj.pyx")],
include_dirs=[
self.CYMJ_DIR_PATH,
join(mujoco_path, 'include'),
np.get_include(),
pkgconfig.cflags('osmesa')[2:],
],
libraries=['mujoco200'],
library_dirs=[join(mujoco_path, 'bin')],
extra_compile_args=[
'-fopenmp', # needed for OpenMP
'-w', # suppress numpy compilation warnings
],
extra_link_args=['-fopenmp'],
language='c')
#sets up all the environment variables required by openvdb
import pkgconfig
print pkgconfig.exists('glib-2.0')
print pkgconfig.cflags('boost')
import os
import subprocess as sub
def callcmd(cmd):
p = sub.Popen(cmd,stdout=sub.PIPE,stderr=sub.PIPE, shell=True)
output, errors = p.communicate()
#print errors
return output
def locatePathToFile(filename, guesses=[]):
#check hypothesises first
for guess in guesses:
dirname=os.path.dirname(guess)
if os.path.isdir(dirname):
print "found "+filename+" in "+dirname
return dirname
#use the OS locate feature
hypothesis=callcmd("locate "+filename)
hlist=hypothesis.split("\n")
dirname=os.path.dirname(hlist[0])
if (not os.path.isdir(dirname)):
raise Exception(filename+" not found!")
print "found "+filename+" in "+dirname
return dirname
def locateIncludeDir(dirname, file_inside, guesses=[]):
"""
typedef guint (*GHashFunc)(gconstpointer key);
typedef gboolean (*GEqualFunc)(gconstpointer a, gconstpointer b);
GHashTable* g_hash_table_new (GHashFunc hash_func,
GEqualFunc key_equal_func);
gboolean g_hash_table_insert (GHashTable *hash_table,
gpointer key,
gpointer value);
void g_hash_table_destroy (GHashTable *hash_table);
guint g_str_hash (gconstpointer v);
gboolean g_str_equal (gconstpointer v1, gconstpointer v1);
"""
ffi = FFI()
includes = pkgconfig.cflags('glib-2.0').replace('-I', '').split(' ')
# set source
ffi.set_source("_glib",
"""
#include <glib.h>
""",
libraries=['glib-2.0'], include_dirs=includes)
ffi.cdef(cdef)
if __name__ == "__main__":
ffi.compile(verbose=True)
from setuptools import setup, Extension
from setuptools.command.install import install
import os
import ConfigParser
try:
import pkgconfig
cflags = pkgconfig.cflags('xmlsec1').replace('\\', '')
if not cflags:
raise
libs = pkgconfig.libs('xmlsec1')
except Exception:
import traceback
print '-' * 100
traceback.print_exc()
print '-' * 100
import platform
cflags = ("-DXMLSEC_CRYPTO=\"openssl\" -D__XMLSEC_FUNCTION__=__FUNCTION__"
" -DXMLSEC_NO_GOST=1 -DXMLSEC_NO_XKMS=1"
" -DXMLSEC_NO_CRYPTO_DYNAMIC_LOADING=1 -DXMLSEC_OPENSSL_100=1"
" -DXMLSEC_CRYPTO_OPENSSL=1"
" -I/usr/include/libxml2 -I/usr/include/xmlsec1")
if platform.uname()[4] == 'x86_64':
cflags = "-DXMLSEC_NO_SIZE_T " + cflags
libs = "-lxmlsec1-openssl -lxmlsec1 -lssl -lcrypto -lxslt -lxml2"
config = ConfigParser.ConfigParser()
config.read('setup.cfg')
locale_dir = config.get("compile_catalog", "directory")
domain = config.get("compile_catalog", "domain")
'-D_DEBUG=1',
'-DJUCER_LINUX_MAKE_6D53C8B4=1',
'-DJUCE_APP_VERSION=0.0.8.10',
'-DJUCE_APP_VERSION_HEX=0x80a',
'-lcrypto',
'-ldl',
'-lpthread',
'-lrt',
'-I./JuceLibraryCode',
'-I/opt/JUCE/modules',
]
pkgConfigFlags = []
for pflag in pkgConfigFlags:
flagList = pkgconfig.cflags(pflag).split(' ')
for f in flagList:
flags.append(f)
for dirname, subdirList, fileList in os.walk('./Source'):
flags.append('-I' + dirname)
def DirectoryOfThisScript():
return os.path.dirname(os.path.abspath(__file__))
def FlagsForFile(filename, **kwargs):
return {
'flags': flags,
'include_paths_relative_to_dir': DirectoryOfThisScript()
import sys
# Use the bundeled pkgconfig
here = os.path.dirname(os.path.realpath(__file__))
sys.path.insert(0, here)
import pkgconfig
cfg_vars = distutils.sysconfig.get_config_vars()
for key, value in cfg_vars.items():
if type(value) == str:
cfg_vars[key] = value.replace("-Wstrict-prototypes", "")
extra_link_args = pkgconfig.libs('gsl').split()
extra_compile_args = pkgconfig.cflags('gsl').split()
extra_compile_args.append('-m64')
extension_mod = Extension(
"_gappa",
[
"_gappa.cc", "../src/Radiation.C", "../src/Particles.C",
"../src/Utils.C", "../src/Astro.C", "../src/2D_interp/interp2d.C",
"../src/2D_interp/interp2d_spline.C", "../src/2D_interp/bilinear.C",
"../src/2D_interp/bicubic.C"
],
extra_compile_args=extra_compile_args,
extra_link_args=extra_link_args,
include_dirs=['../include'],
)
])
if not py3c_found:
include_dirs.append('py3c')
compiler = ccompiler.get_default_compiler()
extra_link_args = []
extra_compile_args = []
if compiler == 'msvc':
extra_compile_args = ['/Ot', '/Wall']
elif compiler in ('unix', 'mingw32'):
if liblz4_found and liblz4_pkgconfig:
extra_link_args.append(pkgconfig.libs('liblz4'))
if pkgconfig.cflags('liblz4'):
extra_compile_args.append(pkgconfig.cflags('liblz4'))
else:
extra_compile_args = ['-O3', '-Wall', '-Wundef']
else:
print('Unrecognized compiler: {0}'.format(compiler))
sys.exit(1)
lz4version = Extension(
'lz4._version',
lz4version_sources,
extra_compile_args=extra_compile_args,
extra_link_args=extra_link_args,
libraries=libraries,
include_dirs=include_dirs,
library_dirs=library_dirs,
def test_cflags():
flags = pkgconfig.cflags(PACKAGE_NAME)
for flag in flags.split(' '):
nt.assert_true(flag in ('-DGSEAL_ENABLE', '-I/usr/include/gtk-3.0'))
def test_cflags():
flags = pkgconfig.cflags(PACKAGE_NAME)
for flag in flags.split(' '):
nt.assert_true(flag in ('-DGSEAL_ENABLE', '-I/usr/include/gtk-3.0'))
from setuptools import setup, Extension
from setuptools.command.install import install
import os
import ConfigParser
try:
import pkgconfig
cflags = pkgconfig.cflags('xmlsec1').replace('\\', '')
if not cflags:
raise
libs = pkgconfig.libs('xmlsec1')
except Exception:
import traceback
print '-' * 100
traceback.print_exc()
print '-' * 100
import platform
cflags = ("-DXMLSEC_CRYPTO=\"openssl\" -D__XMLSEC_FUNCTION__=__FUNCTION__"
" -DXMLSEC_NO_GOST=1 -DXMLSEC_NO_XKMS=1"
" -DXMLSEC_NO_CRYPTO_DYNAMIC_LOADING=1 -DXMLSEC_OPENSSL_100=1"
" -DXMLSEC_CRYPTO_OPENSSL=1"
" -I/usr/include/libxml2 -I/usr/include/xmlsec1")
if platform.uname()[4] == 'x86_64':
cflags = "-DXMLSEC_NO_SIZE_T " + cflags
libs = "-lxmlsec1-openssl -lxmlsec1 -lssl -lcrypto -lxslt -lxml2"
config = ConfigParser.ConfigParser()
config.read('setup.cfg')
locale_dir = config.get("compile_catalog", "directory")
domain = config.get("compile_catalog", "domain")
from distutils.core import setup, Extension
import os
import sys
# Use the bundeled pkgconfig
here = os.path.dirname(os.path.realpath(__file__))
sys.path.insert(0, here)
import pkgconfig
extra_link_args = pkgconfig.libs('gsl').split()
extra_compile_args = pkgconfig.cflags('gsl').split()
extra_compile_args.append('-std=c++11')
extension_mod = Extension(
"_gappa",
["_gappa.cc", "../src/Radiation.C", "../src/Particles.C", "../src/Utils.C", "../src/Astro.C"],
extra_compile_args=extra_compile_args,
extra_link_args=extra_link_args,
include_dirs=['../include'],
)
setup(
name="gappa",
ext_modules=[extension_mod],
)
def cython_aliases():
"""
Return the aliases for compiling Cython code. These aliases are
macros which can occur in ``# distutils`` headers.
EXAMPLES::
sage: from sage.env import cython_aliases
sage: cython_aliases()
{...}
sage: sorted(cython_aliases().keys())
['ARB_LIBRARY',
'CBLAS_CFLAGS',
...,
'ZLIB_LIBRARIES']
"""
import pkgconfig
aliases = {}
for lib in ['fflas-ffpack', 'givaro', 'gsl', 'linbox', 'Singular',
'libpng', 'gdlib', 'm4ri', 'zlib', 'cblas', 'lapack']:
var = lib.upper().replace("-", "") + "_"
if lib == 'cblas':
lib = get_cblas_pc_module_name()
if lib == 'zlib':
aliases[var + "CFLAGS"] = ""
try:
pc = pkgconfig.parse('zlib')
libs = pkgconfig.libs(lib)
except pkgconfig.PackageNotFoundError:
from collections import defaultdict
pc = defaultdict(list, {'libraries': ['z']})
libs = "-lz"
else:
aliases[var + "CFLAGS"] = pkgconfig.cflags(lib).split()
pc = pkgconfig.parse(lib)
libs = pkgconfig.libs(lib)
# It may seem that INCDIR is redundant because the -I options are also
# passed in CFLAGS. However, "extra_compile_args" are put at the end
# of the compiler command line. "include_dirs" go to the front; the
# include search order matters.
aliases[var + "INCDIR"] = pc['include_dirs']
aliases[var + "LIBDIR"] = pc['library_dirs']
aliases[var + "LIBEXTRA"] = list(filter(lambda s: not s.startswith(('-l','-L')), libs.split()))
aliases[var + "LIBRARIES"] = pc['libraries']
# uname-specific flags
UNAME = os.uname()
def uname_specific(name, value, alternative):
if name in UNAME[0]:
return value
else:
return alternative
aliases["LINUX_NOEXECSTACK"] = uname_specific("Linux", ["-Wl,-z,noexecstack"],
[])
aliases["CYGWIN_SQLITE3_LIBS"] = uname_specific("CYGWIN", ["sqlite3"],
[])
# LinBox needs special care because it actually requires C++11 with
# GNU extensions: -std=c++11 does not work, you need -std=gnu++11
# (this is true at least with GCC 7.2.0).
#
# Further, note that LinBox does not add any C++11 flag in its .pc
# file (possibly because of confusion between CFLAGS and CXXFLAGS?).
# This is not a problem in practice since LinBox depends on
# fflas-ffpack and fflas-ffpack does add such a C++11 flag.
aliases["LINBOX_CFLAGS"].append("-std=gnu++11")
aliases["ARB_LIBRARY"] = ARB_LIBRARY
# TODO: Remove Cygwin hack by installing a suitable cblas.pc
if os.path.exists('/usr/lib/libblas.dll.a'):
aliases["CBLAS_LIBS"] = ['gslcblas']
try:
aliases["M4RI_CFLAGS"].remove("-pedantic")
except ValueError:
pass
# Determine ecl-specific compiler arguments using the ecl-config script
ecl_cflags = subprocess.run([ECL_CONFIG, "--cflags"], check=True, stdout=subprocess.PIPE, stderr=subprocess.PIPE, universal_newlines=True).stdout.split()
aliases["ECL_CFLAGS"] = list(filter(lambda s: not s.startswith('-I'), ecl_cflags))
aliases["ECL_INCDIR"] = list(map(lambda s: s[2:], filter(lambda s: s.startswith('-I'), ecl_cflags)))
ecl_libs = subprocess.run([ECL_CONFIG, "--libs"], check=True, stdout=subprocess.PIPE, stderr=subprocess.PIPE, universal_newlines=True).stdout.split()
aliases["ECL_LIBDIR"] = list(map(lambda s: s[2:], filter(lambda s: s.startswith('-L'), ecl_libs)))
aliases["ECL_LIBRARIES"] = list(map(lambda s: s[2:], filter(lambda s: s.startswith('-l'), ecl_libs)))
aliases["ECL_LIBEXTRA"] = list(filter(lambda s: not s.startswith(('-l','-L')), ecl_libs))
# NTL
aliases["NTL_CFLAGS"] = ['-std=c++11']
aliases["NTL_INCDIR"] = [NTL_INCDIR] if NTL_INCDIR else []
aliases["NTL_LIBDIR"] = [NTL_LIBDIR] if NTL_LIBDIR else []
aliases["NTL_LIBRARIES"] = ['ntl']
aliases["NTL_LIBEXTRA"] = []
return aliases
GHashTable* g_hash_table_new (GHashFunc hash_func,
GEqualFunc key_equal_func);
gboolean g_hash_table_insert (GHashTable *hash_table,
gpointer key,
gpointer value);
void g_hash_table_destroy (GHashTable *hash_table);
guint g_str_hash (gconstpointer v);
gboolean g_str_equal (gconstpointer v1, gconstpointer v1);
"""
ffi = FFI()
includes = pkgconfig.cflags('glib-2.0')
if not includes:
raise RuntimeError('Unable to find pkgconfig for glib-2.0')
includes = includes.replace('-I', '').split(' ')
# set source
ffi.set_source("_glib",
"""
#include <glib.h>
""",
libraries=['glib-2.0'],
include_dirs=includes)
ffi.cdef(cdef)
if __name__ == "__main__":
from distutils.core import setup, Extension
import pkgconfig
GSL_CFLAGS = pkgconfig.cflags('gsl')
GSL_LIBS = pkgconfig.libs('gsl')
if(GSL_CFLAGS):
COMPILEARGS=['-std=c++11', GSL_CFLAGS]
else:
COMPILEARGS=['-std=c++11']
extension_mod = Extension("_gamerapy",
["_gamerapy.cc", "../src/Radiation.C","../src/Particles.C","../src/Utils.C","../src/Astro.C"],
extra_compile_args=COMPILEARGS,
libraries=['gsl'],
include_dirs=['../include'],
)
setup(name = "gamerapy", ext_modules=[extension_mod])
from codecs import open
import pkgconfig
here = path.abspath(path.dirname(__file__))
## Getting openbabel setting
openbabel = None
for ob in ['openbabel', 'openbabel-2.0']:
if pkgconfig.exists(ob):
openbabel = ob
if openbabel is None:
raise LookupError("openbabel package not found")
pkgconfig.libs(openbabel)
openbabel_inc_dir = pkgconfig.cflags(openbabel)[2:]
openbabel_lib_dir = pkgconfig.re.split('\s+', pkgconfig.libs(openbabel))[0][2:]
class get_pybind_include(object):
"""Helper class to determine the pybind11 include path
The purpose of this class is to postpone importing pybind11
until it is actually installed, so that the ``get_include()``
method can be invoked. """
def __init__(self, user=False):
self.user = user
def __str__(self):
import pybind11
return pybind11.get_include(self.user)
#!/usr/bin/env python3
#-*- encoding: utf-8 -*-
from distutils.core import setup, Extension
import pkgconfig
rdp_cflags = pkgconfig.cflags('rdp')
rdp_libs = pkgconfig.libs('rdp')
rdp_libs = rdp_libs.replace("-lrdp", "")
rdp_libs = rdp_libs.replace("-L", "")
rdp_libs = rdp_libs.strip()
rdp_libs = rdp_libs + "/librdp.a"
extra_compile_args = [rdp_cflags]
extra_link_args = ['-Wl,--whole-archive', rdp_libs, '-Wl,--no-whole-archive']
wrapper = Extension('rdp.wrapper', ['rdp/wrapper.c'],
extra_compile_args=extra_compile_args,
extra_link_args=extra_link_args)
packages = ['rdp']
print("PACKAGES = ", packages)
setup(name='rdp', version='1.0', packages=packages, ext_modules=[wrapper])
if not "DARKNET_HOME" in os.environ:
darknet_dir = input("$DARKNET_HOME:")
else:
darknet_dir = os.environ["DARKNET_HOME"]
include_paths = [
np.get_include(),
os.path.join(darknet_dir, "include"),
os.path.join(darknet_dir, "src")
]
libraries = ["darknet", "m", "pthread"]
library_paths = [darknet_dir]
extra_compiler_flags = [
pkgconfig.cflags("opencv"),
pkgconfig.cflags("python3")
]
extra_linker_flags = [pkgconfig.libs("opencv"), pkgconfig.libs("python3")]
ext_modules = [
Extension("pydarknet", ["pydarknet.pyx", "pydarknet.pxd", "bridge.cpp"],
include_dirs=include_paths,
language="c++",
libraries=libraries,
library_dirs=library_paths,
extra_link_args=extra_linker_flags,
extra_compile_args=extra_compiler_flags),
]
setup(name='PyDarknet',
cmdclasses = {}
setup_requires = []
install_requires = []
tests_require = []
else:
from Cython.Build import cythonize
from Cython.Distutils import build_ext
import numpy
import numpy.distutils
try:
import pkgconfig
libs = ['blas', 'lapack', 'lapacke']
extra_link_args = [pkgconfig.libs(lib) for lib in libs]
include_dirs = (numpy.distutils.misc_util.get_numpy_include_dirs() +
[pkgconfig.cflags(lib) for lib in libs])
except:
extra_link_args = None
include_dirs = None
if extra_link_args is None or len(''.join(extra_link_args)) == 0:
if sys.platform == 'darwin':
print("Platform Detection: Mac OS X. Link to openblas...")
extra_link_args = ['-L/usr/local/opt/openblas/lib -lopenblas']
include_dirs = (
numpy.distutils.misc_util.get_numpy_include_dirs() +
['/usr/local/opt/openblas/include'])
else:
# assume linux otherwise, unless we support Windows in the future...
print("Platform Detection: Linux. Link to liblapacke...")
extra_link_args = ['-L/usr/lib -llapacke -llapack -lblas']
for el in os.listdir():
fname, ext = os.path.splitext(el)
if ext == suffix:
yield fname, el
if __name__ == '__main__':
check_pkgconfig(['dbus-1'])
p = argparse.ArgumentParser()
p.add_argument('--clang', action='store_true', default=False)
clang = p.parse_args().clang
ninja_vars = OrderedDict(
cxx=find_executable('clang++' if clang else 'c++'),
cxxflags='-std=c++1z -Wall -Wextra -g -D_GNU_SOURCE',
dbus_cflags=pkgconfig.cflags('dbus-1'),
dbus_libs=pkgconfig.libs('dbus-1'),
ninja=find_executable('ninja'))
with open('build.ninja', 'w') as bf, open('.gitignore', 'w') as gign:
bf.write('# Created by configure.py\n# DO NOT EDIT\n\n')
n = ninja.ninja_syntax.Writer(bf)
for key, val in ninja_vars.items():
n.variable(key, val)
n.newline()
n.rule('link', '$cxx $cxxflags -o $out $in', 'CXXLD $out')
n.rule('link-dbus',
'$cxx $cxxflags $dbus_cflags -o $out $in $dbus_libs',
'CXXLD $out')
def cython_aliases(required_modules=None, optional_modules=None):
"""
Return the aliases for compiling Cython code. These aliases are
macros which can occur in ``# distutils`` headers.
INPUT:
- ``required_modules`` -- (default: taken from ``default_required_modules``)
iterable of ``str`` values.
- ``optional_modules`` -- (default: taken from ``default_optional_modules``)
iterable of ``str`` values.
EXAMPLES::
sage: from sage.env import cython_aliases
sage: cython_aliases()
{...}
sage: sorted(cython_aliases().keys())
['ARB_LIBRARY',
'CBLAS_CFLAGS',
...,
'ZLIB_LIBRARIES']
sage: cython_aliases(required_modules=('module-that-is-assumed-to-not-exist'))
Traceback (most recent call last):
...
PackageNotFoundError: ...
sage: cython_aliases(required_modules=(), optional_modules=('module-that-is-assumed-to-not-exist'))
{...}
TESTS:
We can use ``cython.parallel`` regardless of whether OpenMP is supported.
This will run in parallel, if OpenMP is supported::
sage: cython('''
....: #distutils: extra_compile_args = OPENMP_CFLAGS
....: #distutils: extra_link_args = OPENMP_CFLAGS
....: from cython.parallel import prange
....:
....: cdef int i
....: cdef int n = 30
....: cdef int sum = 0
....:
....: for i in prange(n, num_threads=4, nogil=True):
....: sum += i
....:
....: print(sum)
....: ''')
435
"""
import pkgconfig
import itertools
if required_modules is None:
required_modules = default_required_modules
if optional_modules is None:
optional_modules = default_optional_modules
aliases = {}
for lib, required in itertools.chain(
((lib, True) for lib in required_modules),
((lib, False) for lib in optional_modules)):
var = lib.upper().replace("-", "") + "_"
if lib == 'cblas':
lib = get_cblas_pc_module_name()
if lib == 'zlib':
aliases[var + "CFLAGS"] = ""
try:
pc = pkgconfig.parse('zlib')
libs = pkgconfig.libs(lib)
except pkgconfig.PackageNotFoundError:
from collections import defaultdict
pc = defaultdict(list, {'libraries': ['z']})
libs = "-lz"
else:
try:
aliases[var + "CFLAGS"] = pkgconfig.cflags(lib).split()
pc = pkgconfig.parse(lib)
libs = pkgconfig.libs(lib)
except pkgconfig.PackageNotFoundError:
if required:
raise
else:
continue
# It may seem that INCDIR is redundant because the -I options are also
# passed in CFLAGS. However, "extra_compile_args" are put at the end
# of the compiler command line. "include_dirs" go to the front; the
# include search order matters.
aliases[var + "INCDIR"] = pc['include_dirs']
aliases[var + "LIBDIR"] = pc['library_dirs']
aliases[var + "LIBEXTRA"] = list(
filter(lambda s: not s.startswith(('-l', '-L')), libs.split()))
aliases[var + "LIBRARIES"] = pc['libraries']
# uname-specific flags
UNAME = os.uname()
def uname_specific(name, value, alternative):
if name in UNAME[0]:
return value
else:
return alternative
aliases["LINUX_NOEXECSTACK"] = uname_specific("Linux",
["-Wl,-z,noexecstack"], [])
aliases["CYGWIN_SQLITE3_LIBS"] = uname_specific("CYGWIN", ["sqlite3"], [])
# LinBox needs special care because it actually requires C++11 with
# GNU extensions: -std=c++11 does not work, you need -std=gnu++11
# (this is true at least with GCC 7.2.0).
#
# Further, note that LinBox does not add any C++11 flag in its .pc
# file (possibly because of confusion between CFLAGS and CXXFLAGS?).
# This is not a problem in practice since LinBox depends on
# fflas-ffpack and fflas-ffpack does add such a C++11 flag.
if "LINBOX_CFLAGS" in aliases:
aliases["LINBOX_CFLAGS"].append("-std=gnu++11")
aliases["ARB_LIBRARY"] = ARB_LIBRARY
# TODO: Remove Cygwin hack by installing a suitable cblas.pc
if os.path.exists('/usr/lib/libblas.dll.a'):
aliases["CBLAS_LIBS"] = ['gslcblas']
try:
aliases["M4RI_CFLAGS"].remove("-pedantic")
except (ValueError, KeyError):
pass
# Determine ecl-specific compiler arguments using the ecl-config script
ecl_cflags = subprocess.run([ECL_CONFIG, "--cflags"],
check=True,
stdout=subprocess.PIPE,
stderr=subprocess.PIPE,
universal_newlines=True).stdout.split()
aliases["ECL_CFLAGS"] = list(
filter(lambda s: not s.startswith('-I'), ecl_cflags))
aliases["ECL_INCDIR"] = list(
map(lambda s: s[2:], filter(lambda s: s.startswith('-I'), ecl_cflags)))
ecl_libs = subprocess.run([ECL_CONFIG, "--libs"],
check=True,
stdout=subprocess.PIPE,
stderr=subprocess.PIPE,
universal_newlines=True).stdout.split()
aliases["ECL_LIBDIR"] = list(
map(lambda s: s[2:], filter(lambda s: s.startswith('-L'), ecl_libs)))
aliases["ECL_LIBRARIES"] = list(
map(lambda s: s[2:], filter(lambda s: s.startswith('-l'), ecl_libs)))
aliases["ECL_LIBEXTRA"] = list(
filter(lambda s: not s.startswith(('-l', '-L')), ecl_libs))
# NTL
aliases["NTL_CFLAGS"] = ['-std=c++11']
aliases["NTL_INCDIR"] = [NTL_INCDIR] if NTL_INCDIR else []
aliases["NTL_LIBDIR"] = [NTL_LIBDIR] if NTL_LIBDIR else []
aliases["NTL_LIBRARIES"] = ['ntl']
aliases["NTL_LIBEXTRA"] = []
# OpenMP
aliases["OPENMP_CFLAGS"] = OPENMP_CFLAGS.split()
aliases["OPENMP_CXXFLAGS"] = OPENMP_CXXFLAGS.split()
return aliases
from collections import defaultdict
zlib_pc = defaultdict(list, {'libraries': ['z']})
zlib_libs = zlib_pc['libraries']
zlib_library_dirs = zlib_pc['library_dirs']
zlib_include_dirs = zlib_pc['include_dirs']
#########################################################
### M4RI flags
#########################################################
m4ri_pc = pkgconfig.parse('m4ri')
m4ri_libs = m4ri_pc['libraries']
m4ri_library_dirs = m4ri_pc['library_dirs']
m4ri_include_dirs = m4ri_pc['include_dirs']
m4ri_extra_compile_args = pkgconfig.cflags('m4ri').split()
try:
m4ri_extra_compile_args.remove("-pedantic")
except ValueError:
pass
# END copied from module_list.py (but #29706 removes the original).
# This list defines the *order* of linking libraries. A library should
# be put *before* any library it links to. Cython allows
# defining libraries using "# distutils: libraries = LIB". However, if
# there are multiple libraries, the order is undefined so we need to
# manually reorder the libraries according to this list. The order is
# important in particular for Cygwin. Any libraries which are not
# listed here will be added at the end of the list (without changing
# their relative order).
