fins pons normed fdg """ # start wx gui app app = wx.App() roifile = bg.FileDialog(prompt='Choose fsroi csv file', indir='/home/jagust/cindeem/CODE/PetProcessing') arda = '/home/jagust/arda/lblid' root = bg.SimpleDirDialog(prompt='Choose FDG data dir', indir='/home/jagust') cleantime = asctime().replace(' ', '-').replace(':', '-') logfile = os.path.join(root, 'logs', '%s_%s.log' % (__file__, cleantime)) log_settings = pp.get_logging_configdict(logfile) logging.config.dictConfig(log_settings) tracer = 'FDG' user = os.environ['USER'] logging.info('###START %s %s :::' % (tracer, __file__)) logging.info('###TRACER %s :::' % (tracer)) logging.info('###USER : %s' % (user)) subs = bg.MyDirsDialog(prompt='Choose Subjects ', indir='%s/' % root) roid = pp.roilabels_fromcsv(roifile) alld = {} for sub in subs: if 'v2' in sub: logging.info('Skipping visit 2 %s' % (sub)) continue _, fullsubid = os.path.split(sub)
2. copies pet data to Raw 3. converts """ # start wx gui app app = wx.App() arda = "/home/jagust/arda/lblid" root = bg.SimpleDirDialog(prompt="Choose project data dir", indir="/home/jagust") mridir = bg.SimpleDirDialog(prompt="Choose Freesurfer data dir", indir="/home/jagust") cleantime = asctime().replace(" ", "-").replace(":", "-") _, scriptnme = os.path.split(__file__) logfile = os.path.join(root, "logs", "%s_%s.log" % (scriptnme, cleantime)) log_settings = pp.get_logging_configdict(logfile) logging.config.dictConfig(log_settings) tracer = "FDG" user = os.environ["USER"] logging.info("###START Setup Directory :::") logging.info("###TRACER Setup %s :::" % (tracer)) logging.info("###USER : %s" % (user)) subs = bg.MyDirsDialog(prompt="Choose Subjects ", indir="%s/" % root) outdict = {} for s in subs: _, subid = os.path.split(s) globstr = "%s/raw/*.v" % (s) rawpibs = glob(globstr)