fins pons normed fdg
"""
# start wx gui app
app = wx.App()
roifile = bg.FileDialog(prompt='Choose fsroi csv file',
indir='/home/jagust/cindeem/CODE/PetProcessing')
arda = '/home/jagust/arda/lblid'
root = bg.SimpleDirDialog(prompt='Choose FDG data dir',
indir='/home/jagust')
cleantime = asctime().replace(' ', '-').replace(':', '-')
logfile = os.path.join(root, 'logs', '%s_%s.log' % (__file__, cleantime))
log_settings = pp.get_logging_configdict(logfile)
logging.config.dictConfig(log_settings)
tracer = 'FDG'
user = os.environ['USER']
logging.info('###START %s %s :::' % (tracer, __file__))
logging.info('###TRACER %s :::' % (tracer))
logging.info('###USER : %s' % (user))
subs = bg.MyDirsDialog(prompt='Choose Subjects ', indir='%s/' % root)
roid = pp.roilabels_fromcsv(roifile)
alld = {}
for sub in subs:
if 'v2' in sub:
logging.info('Skipping visit 2 %s' % (sub))
continue
_, fullsubid = os.path.split(sub)
2. copies pet data to Raw
3. converts
"""
# start wx gui app
app = wx.App()
arda = "/home/jagust/arda/lblid"
root = bg.SimpleDirDialog(prompt="Choose project data dir", indir="/home/jagust")
mridir = bg.SimpleDirDialog(prompt="Choose Freesurfer data dir", indir="/home/jagust")
cleantime = asctime().replace(" ", "-").replace(":", "-")
_, scriptnme = os.path.split(__file__)
logfile = os.path.join(root, "logs", "%s_%s.log" % (scriptnme, cleantime))
log_settings = pp.get_logging_configdict(logfile)
logging.config.dictConfig(log_settings)
tracer = "FDG"
user = os.environ["USER"]
logging.info("###START Setup Directory :::")
logging.info("###TRACER Setup %s :::" % (tracer))
logging.info("###USER : %s" % (user))
subs = bg.MyDirsDialog(prompt="Choose Subjects ", indir="%s/" % root)
outdict = {}
for s in subs:
_, subid = os.path.split(s)
globstr = "%s/raw/*.v" % (s)
rawpibs = glob(globstr)
