def testReadFile(self):
filename = get_current_module_path(__file__,
"../emmff/spectra/spectrum1.emsa")
self.emsa.open(filename)
self.assertNotEqual(0, len(self.emsa.lines))
self.assertEqual(1054, len(self.emsa.lines))
filename = get_current_module_path(__file__,
"../emmff/spectra/BadFile.emsa")
self.assertRaises(IOError, self.emsa.open, filename)
def setUp(self):
unittest.TestCase.setUp(self)
self.filepath = get_current_module_path(__file__, "../../test_data/k3670_30keV_OFeCalibration.csp")
if not is_test_data_file(self.filepath):
raise SkipTest
self.gpFile = genesisPolarisFile.GenesisPolarisFile()
def setUp(self):
unittest.TestCase.setUp(self)
self.filepath = get_current_module_path(__file__,
"../../test_data/test01.trc")
if not is_test_data_file(self.filepath):
raise SkipTest
self.traceFile = TraceFile.TraceFile(self.filepath)
def setUp(self):
"""
Setup method.
"""
unittest.TestCase.setUp(self)
self.path = get_current_module_path(
__file__, "../../../test_data/Bruker/MapRaw")
def setUp(self):
unittest.TestCase.setUp(self)
self.filepath = get_current_module_path(
__file__, "../emmff/spectra/spectrum1.emsa")
if not os.path.isfile(self.filepath):
raise SkipTest
self.emsa = emsaFormat.EmsaFormat(self.filepath)
def setUp(self):
unittest.TestCase.setUp(self)
self.filepath = get_current_module_path(
__file__, "../../../test_data/SpectrumProcessing 10.txt")
if not is_test_data_file(self.filepath):
raise SkipTest
self.results = ReadSpectrumProcessingResults.ReadSpectrumProcessingResults(
self.filepath)
def setUp(self):
unittest.TestCase.setUp(self)
self.filepathRef = get_current_module_path(__file__, "../../test_data/TEM_Edax/OVERALL.CSV")
if not is_test_data_file(self.filepathRef):
raise SkipTest
self.data = TemCsvFile.TemCsvFile(self.filepathRef)
self.numberPoints = 1024
def setUp(self):
"""
Setup method.
"""
unittest.TestCase.setUp(self)
self.path = get_current_module_path(
__file__, "../../../test_data/OxfordInstruments/MapRaw")
if not os.path.isdir(self.path):
raise SkipTest
def setUp(self):
unittest.TestCase.setUp(self)
filepath = get_current_module_path(__file__, "spectra/spectrum1.emsa")
if not os.path.isfile(filepath):
raise SkipTest
if PY3:
with open(filepath, 'r', newline="\r\n") as f:
self.emsa = emsa.read(f)
elif PY2:
with open(filepath, 'rb') as f:
self.emsa = emsa.read(f)
def setUp(self):
warnings.simplefilter("ignore")
unittest.TestCase.setUp(self)
projectPath = get_current_module_path(__file__)
self.filename = os.path.join(projectPath,
"../../test_data/data0407.ful")
if not is_test_data_file(self.filename):
raise SkipTest
self.linescanFile = JEOL8900McGill.JEOL8900McGill(self.filename)
def testReadlines(self):
emsa = emsaFormat.EmsaFormat()
filename = get_current_module_path(__file__,
"../emmff/spectra/spectrum1.emsa")
emsa.open(filename)
emsa.readLines()
self.assertEquals(30, len(emsa.keywords))
self.assertEquals(1024, len(emsa.values))
def test_isValidFile(self):
folderpath = get_current_module_path(__file__, "../../../test_data")
filepath = os.path.join(folderpath, "SpectrumFullResults 10.txt")
self.assertEquals(True, ReadSpectrumFullResults.isValidFile(filepath))
filepath = os.path.join(folderpath, "SpectrumProcessing 10.txt")
self.assertEquals(False, ReadSpectrumFullResults.isValidFile(filepath))
filepath = os.path.join(folderpath, "AllSpectra.txt")
self.assertEquals(False, ReadSpectrumFullResults.isValidFile(filepath))
#self.fail("Test if the TestCase is working.")
self.assertTrue(True)
def testReadFileTEMBruker(self):
filename = get_current_module_path(
__file__, "../../test_data/TEM_Bruker/Gold-pt 2-2.msa")
if not os.path.isfile(filename):
raise SkipTest
emsa = emsaFormat.EmsaFormat()
emsa.open(filename)
emsa.readLines()
emsa.setHeader()
emsa.setSpectrumData()
self.assertNotEqual(0, len(emsa.lines))
self.assertEqual(1055, len(emsa.lines))
self.assertEqual(1024, len(emsa.values))
self.assertEqual(4096, len(emsa.getDataX()))
self.assertEqual(4096, len(emsa.getDataY()))
def test_is_test_data_file(self):
self.assertFalse(is_test_data_file(self.file_path))
self.assertFalse(is_test_data_file(get_current_module_path(__file__)))
self.assertTrue(is_test_data_file(__file__))
def setUp(self):
unittest.TestCase.setUp(self)
self.file_path = get_current_module_path(__file__, "../test_data/lfs_test_file.txt")
if not os.path.isfile(self.file_path):
raise SkipTest