from glue.ligolw import utils as ligolw_utils from glue.ligolw.utils import segments as ligolw_segments from glue.ligolw.utils import process as ligolw_process from glue.segmentdb import segmentdb_utils logging.basicConfig(format='%(asctime)s:%(levelname)s : %(message)s', \ level=logging.INFO,datefmt='%I:%M:%S') # command line options _desc = __doc__[1:] parser = argparse.ArgumentParser(description=_desc) parser.add_argument('--version', action='version', version=__version__) parser.add_argument("-d", "--output-dir", required=True,\ help="Path to output directory.") _workflow.add_workflow_command_line_group(parser) args = parser.parse_args() workflow = _workflow.Workflow(args) currDir = os.path.abspath(args.output_dir) segDir = os.path.join(currDir, "segments") dfDir = os.path.join(currDir, "datafind") print "BEGIN BY GENERATING SCIENCE AND CAT_X VETOES" def segment_report(sSegs): fullLen = 0 fullNum = 0 shortLen = 0 shortNum = 0
from glue.ligolw import utils as ligolw_utils from glue.ligolw.utils import segments as ligolw_segments from glue.ligolw.utils import process as ligolw_process from glue.segmentdb import segmentdb_utils logging.basicConfig(format='%(asctime)s:%(levelname)s : %(message)s', \ level=logging.INFO,datefmt='%I:%M:%S') # command line options _desc = __doc__[1:] parser = argparse.ArgumentParser(description=_desc) parser.add_argument('--version', action='version', version=__version__) parser.add_argument("-d", "--output-dir", required=True,\ help="Path to output directory.") _workflow.add_workflow_command_line_group(parser) args = parser.parse_args() workflow = _workflow.Workflow(args) currDir = os.path.abspath(args.output_dir) segDir = os.path.join(currDir,"segments") dfDir = os.path.join(currDir,"datafind") print "BEGIN BY GENERATING SCIENCE AND CAT_X VETOES" def segment_report(sSegs): fullLen = 0 fullNum = 0 shortLen = 0 shortNum = 0 longLen = 0