def betas_plot_scatter(data,
annotations,
attributes,
cpg_list,
observables_list,
child_method=Method.linreg,
method_params=None):
"""
Plotting methylation level from observables as scatter for provided subjects subsets and provided CpG list.
Possible parameters of experiment:
* ``'x_range'``: can be ``'auto'`` or list with two elements, which are borders of target axis.
* ...
:param data: pdm.Data instance, which specifies information about dataset.
:param annotations: pdm.Annotations instance, which specifies subset of CpGs.
:param attributes: pdm.Attributes instance, which specifies information about subjects.
:param cpg_list: List of CpGs for plotting
:param observables_list: list of subjects subsets. Each element in list is dict,
where ``key`` is observable name and ``value`` is possible values for this observable.
:param method_params: parameters of experiment.
"""
plot_scatter(data_type=DataType.betas,
data=data,
annotations=annotations,
attributes=attributes,
cpg_list=cpg_list,
observables_list=observables_list,
child_method=child_method,
method_params=method_params)
def genes_plot_scatter(data,
annotations,
attributes,
observables_list,
child_method=Method.linreg,
data_params=None,
method_params=None):
plot_scatter(DataType.genes, data, annotations, attributes,
observables_list, child_method, data_params, method_params)
def residuals_special_plot_scatter(data,
annotations,
attributes,
cpg_list,
observables_list,
child_method=Method.linreg,
params=None):
plot_scatter(DataType.residuals_special, data, annotations, attributes,
cpg_list, observables_list, child_method, params)
def residuals_common_plot_scatter(data,
annotations,
attributes,
cpg_list,
observables_list,
child_method=Method.linreg,
data_params=None,
method_params=None):
plot_scatter(DataType.residuals_common, data, annotations, attributes,
cpg_list, observables_list, child_method, data_params,
method_params)
def cells_plot_scatter(data,
annotations,
attributes,
observables_list,
child_method=Method.linreg,
method_params=None):
plot_scatter(data_type=DataType.cells,
data=data,
annotations=annotations,
attributes=attributes,
observables_list=observables_list,
child_method=child_method,
method_params=method_params)
def epimutations_plot_scatter(
data,
annotations,
attributes,
observables_list,
method_params=None
):
plot_scatter(
DataType.epimutations,
data,
annotations,
attributes,
observables_list,
child_method=Method.linreg,
method_params=method_params
)
def entropy_plot_scatter(
data,
annotations,
attributes,
observables_list,
data_params=None,
method_params=None
):
plot_scatter(
DataType.entropy,
data,
annotations,
attributes,
observables_list,
child_method=Method.linreg,
data_params=data_params,
method_params=method_params
)