def betas_plot_scatter(data, annotations, attributes, cpg_list, observables_list, child_method=Method.linreg, method_params=None): """ Plotting methylation level from observables as scatter for provided subjects subsets and provided CpG list. Possible parameters of experiment: * ``'x_range'``: can be ``'auto'`` or list with two elements, which are borders of target axis. * ... :param data: pdm.Data instance, which specifies information about dataset. :param annotations: pdm.Annotations instance, which specifies subset of CpGs. :param attributes: pdm.Attributes instance, which specifies information about subjects. :param cpg_list: List of CpGs for plotting :param observables_list: list of subjects subsets. Each element in list is dict, where ``key`` is observable name and ``value`` is possible values for this observable. :param method_params: parameters of experiment. """ plot_scatter(data_type=DataType.betas, data=data, annotations=annotations, attributes=attributes, cpg_list=cpg_list, observables_list=observables_list, child_method=child_method, method_params=method_params)
def genes_plot_scatter(data, annotations, attributes, observables_list, child_method=Method.linreg, data_params=None, method_params=None): plot_scatter(DataType.genes, data, annotations, attributes, observables_list, child_method, data_params, method_params)
def residuals_special_plot_scatter(data, annotations, attributes, cpg_list, observables_list, child_method=Method.linreg, params=None): plot_scatter(DataType.residuals_special, data, annotations, attributes, cpg_list, observables_list, child_method, params)
def residuals_common_plot_scatter(data, annotations, attributes, cpg_list, observables_list, child_method=Method.linreg, data_params=None, method_params=None): plot_scatter(DataType.residuals_common, data, annotations, attributes, cpg_list, observables_list, child_method, data_params, method_params)
def cells_plot_scatter(data, annotations, attributes, observables_list, child_method=Method.linreg, method_params=None): plot_scatter(data_type=DataType.cells, data=data, annotations=annotations, attributes=attributes, observables_list=observables_list, child_method=child_method, method_params=method_params)
def epimutations_plot_scatter( data, annotations, attributes, observables_list, method_params=None ): plot_scatter( DataType.epimutations, data, annotations, attributes, observables_list, child_method=Method.linreg, method_params=method_params )
def entropy_plot_scatter( data, annotations, attributes, observables_list, data_params=None, method_params=None ): plot_scatter( DataType.entropy, data, annotations, attributes, observables_list, child_method=Method.linreg, data_params=data_params, method_params=method_params )