def appendParametersToDOMTree(self, doc, node):
if self.cuboid is not None:
if 0:
print ""
print "Appending to DOM tree:"
print "- parameters :"
print self.parameters
print "- cuboid descrip:"
print self.cuboid.descrip()
lu = max([self.longest_underscore(an) for an in self.cuboid.getAxesNames()])
lud = 0
for d in self.cuboid.getAxesDomains():
if "str" in d.dtype.name:
lud = max([self.longest_underscore(v) for v in d])
sep = "_" * (max([lud, lu]) + 1)
if self.cuboid.is_nii_writable():
fn0 = op.join(self.outDir, self.parameters["name"] + ".nii")
eaxes, fns = writexndarrayToNiftii(self.cuboid, fn0, sep=sep)
fns = fns.values()
elif self.cuboid.getNbDims() <= 2:
eaxes = []
fns = [op.join(self.outDir, self.parameters["name"] + ".csv")]
self.cuboid.save(fns[0])
else:
eaxes = []
fns = [op.join(self.outDir, self.parameters["name"] + ".h5")]
self.cuboid.save(fns[0])
self.parameters["dataFiles"] = fns
self.parameters["explodedAxes"] = eaxes
# print 'eaxes:', eaxes
XMLParamDrivenClass.appendParametersToDOMTree(self, doc, node)
def appendParametersToDOMTree(self, doc, node):
if self.savexndarray:
if self.cuboid is not None:
if 0:
print ""
print "Appending to DOM tree:"
print "- parameters :"
print self.parameters
print "- cuboid descrip:"
print self.cuboid.descrip()
sep = "_"
if self.cuboid.is_nii_writable():
fn0 = op.join(self.outDir, self.parameters["name"] + ".nii")
pyhrf.verbose(3, "Writing cuboid for %s ..." % self.parameters["name"])
eaxes, slicefns = writexndarrayToNiftii(self.cuboid, fn0, sep=sep, meta_data=self.meta_data)
pyhrf.verbose(3, "Written cuboid for %s" % self.parameters["name"])
elif self.cuboid.getNbDims() <= 2:
eaxes = []
fn = op.join(self.outDir, self.parameters["name"] + ".csv")
# slicefns = { ('_','_') : fn }
slicefns = {None: fn}
self.cuboid.save(fn)
else:
eaxes = []
fn = op.join(self.outDir, self.parameters["name"] + ".h5")
# slicefns = { ('_','_') : fn }
slicefns = {None: fn}
self.cuboid.save(fn)
for s, f in slicefns.iteritems():
if self.useRelativePath:
slicefns[s] = op.join("./", op.basename(f))
else:
slicefns[s] = op.abspath(f)
self.parameters["dataFiles"] = slicefns
self.parameters["explodedAxes"] = eaxes
# print 'eaxes:', eaxes
XMLParamDrivenClass.appendParametersToDOMTree(self, doc, node)
else:
raise Exception("No cuboid to save")
else:
XMLParamDrivenClass.appendParametersToDOMTree(self, doc, node)
