def appendParametersToDOMTree(self, doc, node): if self.cuboid is not None: if 0: print "" print "Appending to DOM tree:" print "- parameters :" print self.parameters print "- cuboid descrip:" print self.cuboid.descrip() lu = max([self.longest_underscore(an) for an in self.cuboid.getAxesNames()]) lud = 0 for d in self.cuboid.getAxesDomains(): if "str" in d.dtype.name: lud = max([self.longest_underscore(v) for v in d]) sep = "_" * (max([lud, lu]) + 1) if self.cuboid.is_nii_writable(): fn0 = op.join(self.outDir, self.parameters["name"] + ".nii") eaxes, fns = writexndarrayToNiftii(self.cuboid, fn0, sep=sep) fns = fns.values() elif self.cuboid.getNbDims() <= 2: eaxes = [] fns = [op.join(self.outDir, self.parameters["name"] + ".csv")] self.cuboid.save(fns[0]) else: eaxes = [] fns = [op.join(self.outDir, self.parameters["name"] + ".h5")] self.cuboid.save(fns[0]) self.parameters["dataFiles"] = fns self.parameters["explodedAxes"] = eaxes # print 'eaxes:', eaxes XMLParamDrivenClass.appendParametersToDOMTree(self, doc, node)
def appendParametersToDOMTree(self, doc, node): if self.savexndarray: if self.cuboid is not None: if 0: print "" print "Appending to DOM tree:" print "- parameters :" print self.parameters print "- cuboid descrip:" print self.cuboid.descrip() sep = "_" if self.cuboid.is_nii_writable(): fn0 = op.join(self.outDir, self.parameters["name"] + ".nii") pyhrf.verbose(3, "Writing cuboid for %s ..." % self.parameters["name"]) eaxes, slicefns = writexndarrayToNiftii(self.cuboid, fn0, sep=sep, meta_data=self.meta_data) pyhrf.verbose(3, "Written cuboid for %s" % self.parameters["name"]) elif self.cuboid.getNbDims() <= 2: eaxes = [] fn = op.join(self.outDir, self.parameters["name"] + ".csv") # slicefns = { ('_','_') : fn } slicefns = {None: fn} self.cuboid.save(fn) else: eaxes = [] fn = op.join(self.outDir, self.parameters["name"] + ".h5") # slicefns = { ('_','_') : fn } slicefns = {None: fn} self.cuboid.save(fn) for s, f in slicefns.iteritems(): if self.useRelativePath: slicefns[s] = op.join("./", op.basename(f)) else: slicefns[s] = op.abspath(f) self.parameters["dataFiles"] = slicefns self.parameters["explodedAxes"] = eaxes # print 'eaxes:', eaxes XMLParamDrivenClass.appendParametersToDOMTree(self, doc, node) else: raise Exception("No cuboid to save") else: XMLParamDrivenClass.appendParametersToDOMTree(self, doc, node)