def test_validate_sample_horizontallayers_invalid(exporter, options):
sample = HorizontalLayerSample(COPPER)
sample.add_layer(ZINC, -1.0)
erracc = ErrorAccumulator()
exporter._validate_sample_horizontallayers(sample, options, erracc)
assert len(erracc.exceptions) == 1
assert len(erracc.warnings) == 0
def testvalidate_sample_horizontallayers_exception(self):
sample = HorizontalLayerSample(COPPER)
sample.add_layer(ZINC, -1.0)
self.assertRaises(ValidationError, self.v.validate_sample, sample,
self.options)
errors = set()
self.v._validate_sample(sample, self.options, errors)
self.assertEqual(1, len(errors))
def testhorizontallayers8(self):
sample = HorizontalLayerSample(Material.pure(39))
sample.add_layer(Material.pure(40), 20e-9)
sample.add_layer(Material.pure(41), 20e-9)
sample.add_layer(Material.pure(42), 20e-9)
sample.add_layer(Material.pure(44), 20e-9)
sample.add_layer(Material.pure(45), 20e-9)
sample.add_layer(Material.pure(46), 20e-9)
sample.add_layer(Material.pure(47), 20e-9)
self._run_and_test(sample)
def testexport_multilayers1(self):
# Options
mat1 = Material('Mat1', {79: 0.5, 47: 0.5}, 2.0)
mat2 = Material('Mat2', {29: 0.5, 30: 0.5}, 3.0)
mat3 = Material('Mat3', {13: 0.5, 14: 0.5}, 4.0)
sample = HorizontalLayerSample(mat1)
sample.add_layer(mat2, 25e-9)
sample.add_layer(mat3, 55e-9)
self.options.sample = sample
# Export
self.e.export(self.options, self.tmpdir)
# Test
filepaths = glob.glob(os.path.join(self.tmpdir, '*.sim'))
self.assertEqual(1, len(filepaths))
casfile = File()
casfile.readFromFilepath(filepaths[0])
simdata = casfile.getOptionSimulationData()
regionops = simdata.getRegionOptions()
self.assertEqual(3, regionops.getNumberRegions())
region = regionops.getRegion(0)
elements = list(map(operator.attrgetter('Z'), region.getElements()))
self.assertAlmostEqual(mat2.density_kg_per_m3 / 1000.0, region.Rho, 4)
self.assertEqual('Mat2', region.Name)
self.assertEqual(2, len(elements))
self.assertTrue(29 in elements)
self.assertTrue(30 in elements)
region = regionops.getRegion(1)
elements = list(map(operator.attrgetter('Z'), region.getElements()))
self.assertAlmostEqual(mat3.density_kg_per_m3 / 1000.0, region.Rho, 4)
self.assertEqual('Mat3', region.Name)
self.assertEqual(2, len(elements))
self.assertTrue(13 in elements)
self.assertTrue(14 in elements)
region = regionops.getRegion(2)
elements = list(map(operator.attrgetter('Z'), region.getElements()))
self.assertAlmostEqual(mat1.density_kg_per_m3 / 1000.0, region.Rho, 4)
self.assertEqual('Mat1', region.Name)
self.assertEqual(2, len(elements))
self.assertTrue(79 in elements)
self.assertTrue(47 in elements)
async def test_exporter_horizontallayers(
event_loop, exporter, options, tmp_path, dry_run
):
mat1 = Material("Mat1", {79: 0.5, 47: 0.5}, 2.0)
mat2 = Material("Mat2", {29: 0.5, 30: 0.5}, 3.0)
options.sample = HorizontalLayerSample(mat1)
options.sample.add_layer(mat2, 10e-9)
await exporter.export(options, tmp_path, dry_run=dry_run)
_test_export(tmp_path, 2, 2, dry_run)
def _validate_sample_horizontallayers(self, sample, options, errors):
substrate_material = \
self._validate_sample_horizontallayers_substrate_material(sample.substrate_material, options, errors)
layers = \
self._validate_sample_horizontallayers_layers(sample.layers, options, errors)
tilt_rad = \
self._validate_sample_base_tilt_rad(sample.tilt_rad, options, errors)
azimuth_rad = \
self._validate_sample_base_azimuth_rad(sample.azimuth_rad, options, errors)
return HorizontalLayerSample(substrate_material, layers, tilt_rad, azimuth_rad)
def run(): # pragma: no cover
import sys
from pymontecarlo.options.beam import GaussianBeam
from pymontecarlo.options.sample import HorizontalLayerSample
from pymontecarlo.options.material import Material
app = QtWidgets.QApplication(sys.argv)
widget = SampleFigureWidget()
sample = HorizontalLayerSample(Material.pure(29))
sample.add_layer(Material.pure(30), 10e-9)
widget.setSample(sample)
beam = GaussianBeam(15e3, 5e-9)
widget.addBeam(beam)
mainwindow = QtWidgets.QMainWindow()
mainwindow.setCentralWidget(widget)
mainwindow.show()
app.exec_()
def _create_samples():
yield SubstrateSample(Material.pure(39))
for number_layers in range(1, 10 + 1):
sample = HorizontalLayerSample(Material.pure(39))
for i in range(number_layers):
sample.add_layer(Material.pure(40 + i), 20e-9)
yield sample
for number_layers in range(0, 9 + 1):
sample = VerticalLayerSample(Material.pure(39), Material.pure(40))
for i in range(number_layers):
sample.add_layer(Material.pure(40 + i), 20e-9)
yield sample
def _create_samples(number_layers=2):
yield SubstrateSample(Material.pure(39))
yield InclusionSample(Material.pure(39), Material.pure(40), 20e-9)
sample = HorizontalLayerSample(Material.pure(39))
for i in range(number_layers):
sample.add_layer(Material.pure(50 + i), 20e-9)
yield sample
sample = VerticalLayerSample(Material.pure(39), Material.pure(40))
for i in range(number_layers):
sample.add_layer(Material.pure(40 + i), 20e-9)
yield sample
yield SphereSample(Material.pure(39), 20e-9)
def test_samplefigure_draw_nothing(samplefigure, ax):
samplefigure.draw(ax)
assert len(ax.collections) == 0
@pytest.mark.parametrize(
"sample,perspective,expected_path_count",
[
(SubstrateSample(MATERIAL_DS), Perspective.XY, 1),
(SubstrateSample(MATERIAL_DS), Perspective.XZ, 1),
(SubstrateSample(MATERIAL_DS), Perspective.YZ, 1),
(InclusionSample(MATERIAL_DS, MATERIAL_RG, 0.5), Perspective.XY, 2),
(InclusionSample(MATERIAL_DS, MATERIAL_RG, 0.5), Perspective.XZ, 2),
(InclusionSample(MATERIAL_DS, MATERIAL_RG, 0.5), Perspective.YZ, 2),
(HorizontalLayerSample(MATERIAL_DS, LAYERS), Perspective.XY, 1),
(HorizontalLayerSample(MATERIAL_DS, LAYERS), Perspective.XZ, 5),
(HorizontalLayerSample(MATERIAL_DS, LAYERS), Perspective.YZ, 5),
(VerticalLayerSample(MATERIAL_DS, MATERIAL_AU,
LAYERS), Perspective.XY, 6),
(VerticalLayerSample(MATERIAL_DS, MATERIAL_AU,
LAYERS), Perspective.XZ, 6),
(VerticalLayerSample(MATERIAL_DS, MATERIAL_AU,
LAYERS), Perspective.YZ, 1),
(SphereSample(MATERIAL_DS, 0.5), Perspective.XY, 1),
(SphereSample(MATERIAL_DS, 0.5), Perspective.XZ, 1),
(SphereSample(MATERIAL_DS, 0.5), Perspective.YZ, 1),
],
)
def test_samplefigure_draw_sample(samplefigure, ax, sample, perspective,
expected_path_count):
def test_compose_sample_hlayer(self):
sample = HorizontalLayerSample(self.mat_ds, self.layer)
self._compose_sample(sample, (5, 5, 1))
def plot(self):
tilt_rad = math.radians(self._slider_tilt_deg.value())
rotation_rad = math.radians(self._slider_rotation_deg.value())
layer = [
Layer(RE, 10e-9),
Layer(OS, 15e-9),
Layer(IR, 20e-9),
Layer(PT, 5e-9)
]
sample_cls = self._combo_sample.currentData()
if sample_cls == SubstrateSample:
sample = SubstrateSample(DS,
tilt_rad=tilt_rad,
rotation_rad=rotation_rad)
elif sample_cls == InclusionSample:
sample = InclusionSample(DS,
AU,
0.5e-6,
tilt_rad=tilt_rad,
rotation_rad=rotation_rad)
elif sample_cls == HorizontalLayerSample:
sample = HorizontalLayerSample(DS,
layer,
tilt_rad=tilt_rad,
rotation_rad=rotation_rad)
elif sample_cls == VerticalLayerSample:
sample = VerticalLayerSample(DS,
RG,
layer,
tilt_rad=tilt_rad,
rotation_rad=rotation_rad)
elif sample_cls == SphereSample:
sample = SphereSample(AU,
0.5e-6,
tilt_rad=tilt_rad,
rotation_rad=rotation_rad)
else:
sample = None
beam_cls = self._combo_beam.currentData()
if beam_cls == GaussianBeam:
beams = [GaussianBeam(42.0, 5e-9)]
else:
beams = []
# trajectory_cls = self._combo_trajectory.currentData()
# TODO handle trajectories
trajectories = []
sf = SampleFigure(sample, beams, trajectories)
if self.radio_yz.isChecked():
sf.perspective = Perspective.YZ
elif self.radio_xy.isChecked():
sf.perspective = Perspective.XY
else:
sf.perspective = Perspective.XZ
self._figure.clf()
ax = self._figure.add_subplot(111)
ax.xaxis.set_visible(False)
ax.yaxis.set_visible(False)
sf.draw(ax)
scalebar = ScaleBar(1.0, location="lower left")
ax.add_artist(scalebar)
self._canvas.draw_idle()
def testvalidate_sample_horizontallayers_empty_layer(self):
sample = HorizontalLayerSample(COPPER)
sample.add_layer(ZINC, 1.0)
sample.add_layer(VACUUM, 2.0)
sample2 = self.v.validate_sample(sample, self.options)
self.assertEqual(1, len(sample2.layers))
def testvalidate_sample_horizontallayers(self):
sample = HorizontalLayerSample(COPPER)
sample.add_layer(ZINC, 1.0)
sample2 = self.v.validate_sample(sample, self.options)
self.assertEqual(sample2, sample)
self.assertIsNot(sample2, sample)