def test_validate_sample_horizontallayers_invalid(exporter, options): sample = HorizontalLayerSample(COPPER) sample.add_layer(ZINC, -1.0) erracc = ErrorAccumulator() exporter._validate_sample_horizontallayers(sample, options, erracc) assert len(erracc.exceptions) == 1 assert len(erracc.warnings) == 0
def testvalidate_sample_horizontallayers_exception(self): sample = HorizontalLayerSample(COPPER) sample.add_layer(ZINC, -1.0) self.assertRaises(ValidationError, self.v.validate_sample, sample, self.options) errors = set() self.v._validate_sample(sample, self.options, errors) self.assertEqual(1, len(errors))
def testhorizontallayers8(self): sample = HorizontalLayerSample(Material.pure(39)) sample.add_layer(Material.pure(40), 20e-9) sample.add_layer(Material.pure(41), 20e-9) sample.add_layer(Material.pure(42), 20e-9) sample.add_layer(Material.pure(44), 20e-9) sample.add_layer(Material.pure(45), 20e-9) sample.add_layer(Material.pure(46), 20e-9) sample.add_layer(Material.pure(47), 20e-9) self._run_and_test(sample)
def testexport_multilayers1(self): # Options mat1 = Material('Mat1', {79: 0.5, 47: 0.5}, 2.0) mat2 = Material('Mat2', {29: 0.5, 30: 0.5}, 3.0) mat3 = Material('Mat3', {13: 0.5, 14: 0.5}, 4.0) sample = HorizontalLayerSample(mat1) sample.add_layer(mat2, 25e-9) sample.add_layer(mat3, 55e-9) self.options.sample = sample # Export self.e.export(self.options, self.tmpdir) # Test filepaths = glob.glob(os.path.join(self.tmpdir, '*.sim')) self.assertEqual(1, len(filepaths)) casfile = File() casfile.readFromFilepath(filepaths[0]) simdata = casfile.getOptionSimulationData() regionops = simdata.getRegionOptions() self.assertEqual(3, regionops.getNumberRegions()) region = regionops.getRegion(0) elements = list(map(operator.attrgetter('Z'), region.getElements())) self.assertAlmostEqual(mat2.density_kg_per_m3 / 1000.0, region.Rho, 4) self.assertEqual('Mat2', region.Name) self.assertEqual(2, len(elements)) self.assertTrue(29 in elements) self.assertTrue(30 in elements) region = regionops.getRegion(1) elements = list(map(operator.attrgetter('Z'), region.getElements())) self.assertAlmostEqual(mat3.density_kg_per_m3 / 1000.0, region.Rho, 4) self.assertEqual('Mat3', region.Name) self.assertEqual(2, len(elements)) self.assertTrue(13 in elements) self.assertTrue(14 in elements) region = regionops.getRegion(2) elements = list(map(operator.attrgetter('Z'), region.getElements())) self.assertAlmostEqual(mat1.density_kg_per_m3 / 1000.0, region.Rho, 4) self.assertEqual('Mat1', region.Name) self.assertEqual(2, len(elements)) self.assertTrue(79 in elements) self.assertTrue(47 in elements)
async def test_exporter_horizontallayers( event_loop, exporter, options, tmp_path, dry_run ): mat1 = Material("Mat1", {79: 0.5, 47: 0.5}, 2.0) mat2 = Material("Mat2", {29: 0.5, 30: 0.5}, 3.0) options.sample = HorizontalLayerSample(mat1) options.sample.add_layer(mat2, 10e-9) await exporter.export(options, tmp_path, dry_run=dry_run) _test_export(tmp_path, 2, 2, dry_run)
def _validate_sample_horizontallayers(self, sample, options, errors): substrate_material = \ self._validate_sample_horizontallayers_substrate_material(sample.substrate_material, options, errors) layers = \ self._validate_sample_horizontallayers_layers(sample.layers, options, errors) tilt_rad = \ self._validate_sample_base_tilt_rad(sample.tilt_rad, options, errors) azimuth_rad = \ self._validate_sample_base_azimuth_rad(sample.azimuth_rad, options, errors) return HorizontalLayerSample(substrate_material, layers, tilt_rad, azimuth_rad)
def run(): # pragma: no cover import sys from pymontecarlo.options.beam import GaussianBeam from pymontecarlo.options.sample import HorizontalLayerSample from pymontecarlo.options.material import Material app = QtWidgets.QApplication(sys.argv) widget = SampleFigureWidget() sample = HorizontalLayerSample(Material.pure(29)) sample.add_layer(Material.pure(30), 10e-9) widget.setSample(sample) beam = GaussianBeam(15e3, 5e-9) widget.addBeam(beam) mainwindow = QtWidgets.QMainWindow() mainwindow.setCentralWidget(widget) mainwindow.show() app.exec_()
def _create_samples(): yield SubstrateSample(Material.pure(39)) for number_layers in range(1, 10 + 1): sample = HorizontalLayerSample(Material.pure(39)) for i in range(number_layers): sample.add_layer(Material.pure(40 + i), 20e-9) yield sample for number_layers in range(0, 9 + 1): sample = VerticalLayerSample(Material.pure(39), Material.pure(40)) for i in range(number_layers): sample.add_layer(Material.pure(40 + i), 20e-9) yield sample
def _create_samples(number_layers=2): yield SubstrateSample(Material.pure(39)) yield InclusionSample(Material.pure(39), Material.pure(40), 20e-9) sample = HorizontalLayerSample(Material.pure(39)) for i in range(number_layers): sample.add_layer(Material.pure(50 + i), 20e-9) yield sample sample = VerticalLayerSample(Material.pure(39), Material.pure(40)) for i in range(number_layers): sample.add_layer(Material.pure(40 + i), 20e-9) yield sample yield SphereSample(Material.pure(39), 20e-9)
def test_samplefigure_draw_nothing(samplefigure, ax): samplefigure.draw(ax) assert len(ax.collections) == 0 @pytest.mark.parametrize( "sample,perspective,expected_path_count", [ (SubstrateSample(MATERIAL_DS), Perspective.XY, 1), (SubstrateSample(MATERIAL_DS), Perspective.XZ, 1), (SubstrateSample(MATERIAL_DS), Perspective.YZ, 1), (InclusionSample(MATERIAL_DS, MATERIAL_RG, 0.5), Perspective.XY, 2), (InclusionSample(MATERIAL_DS, MATERIAL_RG, 0.5), Perspective.XZ, 2), (InclusionSample(MATERIAL_DS, MATERIAL_RG, 0.5), Perspective.YZ, 2), (HorizontalLayerSample(MATERIAL_DS, LAYERS), Perspective.XY, 1), (HorizontalLayerSample(MATERIAL_DS, LAYERS), Perspective.XZ, 5), (HorizontalLayerSample(MATERIAL_DS, LAYERS), Perspective.YZ, 5), (VerticalLayerSample(MATERIAL_DS, MATERIAL_AU, LAYERS), Perspective.XY, 6), (VerticalLayerSample(MATERIAL_DS, MATERIAL_AU, LAYERS), Perspective.XZ, 6), (VerticalLayerSample(MATERIAL_DS, MATERIAL_AU, LAYERS), Perspective.YZ, 1), (SphereSample(MATERIAL_DS, 0.5), Perspective.XY, 1), (SphereSample(MATERIAL_DS, 0.5), Perspective.XZ, 1), (SphereSample(MATERIAL_DS, 0.5), Perspective.YZ, 1), ], ) def test_samplefigure_draw_sample(samplefigure, ax, sample, perspective, expected_path_count):
def test_compose_sample_hlayer(self): sample = HorizontalLayerSample(self.mat_ds, self.layer) self._compose_sample(sample, (5, 5, 1))
def plot(self): tilt_rad = math.radians(self._slider_tilt_deg.value()) rotation_rad = math.radians(self._slider_rotation_deg.value()) layer = [ Layer(RE, 10e-9), Layer(OS, 15e-9), Layer(IR, 20e-9), Layer(PT, 5e-9) ] sample_cls = self._combo_sample.currentData() if sample_cls == SubstrateSample: sample = SubstrateSample(DS, tilt_rad=tilt_rad, rotation_rad=rotation_rad) elif sample_cls == InclusionSample: sample = InclusionSample(DS, AU, 0.5e-6, tilt_rad=tilt_rad, rotation_rad=rotation_rad) elif sample_cls == HorizontalLayerSample: sample = HorizontalLayerSample(DS, layer, tilt_rad=tilt_rad, rotation_rad=rotation_rad) elif sample_cls == VerticalLayerSample: sample = VerticalLayerSample(DS, RG, layer, tilt_rad=tilt_rad, rotation_rad=rotation_rad) elif sample_cls == SphereSample: sample = SphereSample(AU, 0.5e-6, tilt_rad=tilt_rad, rotation_rad=rotation_rad) else: sample = None beam_cls = self._combo_beam.currentData() if beam_cls == GaussianBeam: beams = [GaussianBeam(42.0, 5e-9)] else: beams = [] # trajectory_cls = self._combo_trajectory.currentData() # TODO handle trajectories trajectories = [] sf = SampleFigure(sample, beams, trajectories) if self.radio_yz.isChecked(): sf.perspective = Perspective.YZ elif self.radio_xy.isChecked(): sf.perspective = Perspective.XY else: sf.perspective = Perspective.XZ self._figure.clf() ax = self._figure.add_subplot(111) ax.xaxis.set_visible(False) ax.yaxis.set_visible(False) sf.draw(ax) scalebar = ScaleBar(1.0, location="lower left") ax.add_artist(scalebar) self._canvas.draw_idle()
def testvalidate_sample_horizontallayers_empty_layer(self): sample = HorizontalLayerSample(COPPER) sample.add_layer(ZINC, 1.0) sample.add_layer(VACUUM, 2.0) sample2 = self.v.validate_sample(sample, self.options) self.assertEqual(1, len(sample2.layers))
def testvalidate_sample_horizontallayers(self): sample = HorizontalLayerSample(COPPER) sample.add_layer(ZINC, 1.0) sample2 = self.v.validate_sample(sample, self.options) self.assertEqual(sample2, sample) self.assertIsNot(sample2, sample)