def process(self): ret_list = [] sample_ids = [] if type(self.input_files) != list: self.input_files = [self.input_files] for filename in self.input_files: for row in Fofn.get_rows(filename): ret_list.append(row[0]) ret_list.append(row[1]) sample_ids.extend(2 * [row[2]]) self.output_files = ret_list self.meta["job"]["sample_id"] = sample_ids
def process(self): ret_list = [] sample_ids = [] if type(self.input_files) != list: self.input_files = [self.input_files] for filename in self.input_files: for row in Fofn.get_rows(filename): ret_list.append(row[0]) ret_list.append(row[1]) sample_ids.extend(2 * [row[2]]) self.output_files = ret_list self.meta['job']['sample_id'] = sample_ids