def process(self):
ret_list = []
sample_ids = []
if type(self.input_files) != list:
self.input_files = [self.input_files]
for filename in self.input_files:
for row in Fofn.get_rows(filename):
ret_list.append(row[0])
ret_list.append(row[1])
sample_ids.extend(2 * [row[2]])
self.output_files = ret_list
self.meta["job"]["sample_id"] = sample_ids
def process(self):
ret_list = []
sample_ids = []
if type(self.input_files) != list:
self.input_files = [self.input_files]
for filename in self.input_files:
for row in Fofn.get_rows(filename):
ret_list.append(row[0])
ret_list.append(row[1])
sample_ids.extend(2 * [row[2]])
self.output_files = ret_list
self.meta['job']['sample_id'] = sample_ids
