def test_file_translation(self):
filename = make_temp_dir('to_new_tree.hdf5')
mytraj = Trajectory('SCRATCH', filename=filename)
mytraj.f_add_parameter('Test.Group.Test', 42)
mytraj.f_add_derived_parameter('trajectory.saaaa', 33)
mytraj.f_add_derived_parameter('trajectory.intraj.dpar1', 33)
mytraj.f_add_derived_parameter('run_00000008.inrun.dpar2', 33)
mytraj.f_add_derived_parameter('run_00000001.inrun.dpar3', 35)
mytraj.f_add_result('trajectory.intraj.res1', 33)
mytraj.f_add_result('run_00000008.inrun.res1', 33)
mytraj.f_store()
mytraj.f_migrate(new_name=mytraj.v_name + 'PETER', in_store=True)
mytraj.f_store()
fu = FileUpdater(filename=filename, backup=True)
fu.update_file()
mytraj = Trajectory(name=mytraj.v_name,
add_time=False,
filename=filename)
mytraj.f_load(load_parameters=2,
load_derived_parameters=2,
load_results=2)
for node in mytraj.f_iter_nodes():
self.assertTrue(node.v_name != 'trajectory')
if 'run_' in node.v_full_name:
self.assertTrue('.runs.' in node.v_full_name)
remove_data()
def test_file_translation(self):
filename = make_temp_dir('to_new_tree.hdf5')
mytraj = Trajectory('SCRATCH', filename=filename)
mytraj.f_add_parameter('Test.Group.Test', 42)
mytraj.f_add_derived_parameter('trajectory.saaaa',33)
mytraj.f_add_derived_parameter('trajectory.intraj.dpar1',33)
mytraj.f_add_derived_parameter('run_00000008.inrun.dpar2',33)
mytraj.f_add_derived_parameter('run_00000001.inrun.dpar3',35)
mytraj.f_add_result('trajectory.intraj.res1',33)
mytraj.f_add_result('run_00000008.inrun.res1',33)
mytraj.f_store()
mytraj.f_migrate(new_name=mytraj.v_name + 'PETER', in_store=True)
mytraj.f_store()
fu=FileUpdater(filename=filename, backup=True)
fu.update_file()
mytraj = Trajectory(name=mytraj.v_name, add_time=False, filename=filename)
mytraj.f_load(load_parameters=2, load_derived_parameters=2, load_results=2)
for node in mytraj.f_iter_nodes():
self.assertTrue(node.v_name != 'trajectory')
if 'run_' in node.v_full_name:
self.assertTrue('.runs.' in node.v_full_name)
remove_data()
def tearDown(self):
remove_data()
def tearDown(self):
if hasattr(self, 'env') and hasattr(self.env, 'f_disable_logging'):
self.env.f_disable_logging()
self.clear_handlers()
remove_data()
def tearDown(self):
if hasattr(self, 'env') and hasattr(self.env, 'f_disable_logging'):
self.env.f_disable_logging()
self.clear_handlers()
remove_data()
def tearDown(self):
remove_data()
