def test_file_translation(self): filename = make_temp_dir('to_new_tree.hdf5') mytraj = Trajectory('SCRATCH', filename=filename) mytraj.f_add_parameter('Test.Group.Test', 42) mytraj.f_add_derived_parameter('trajectory.saaaa', 33) mytraj.f_add_derived_parameter('trajectory.intraj.dpar1', 33) mytraj.f_add_derived_parameter('run_00000008.inrun.dpar2', 33) mytraj.f_add_derived_parameter('run_00000001.inrun.dpar3', 35) mytraj.f_add_result('trajectory.intraj.res1', 33) mytraj.f_add_result('run_00000008.inrun.res1', 33) mytraj.f_store() mytraj.f_migrate(new_name=mytraj.v_name + 'PETER', in_store=True) mytraj.f_store() fu = FileUpdater(filename=filename, backup=True) fu.update_file() mytraj = Trajectory(name=mytraj.v_name, add_time=False, filename=filename) mytraj.f_load(load_parameters=2, load_derived_parameters=2, load_results=2) for node in mytraj.f_iter_nodes(): self.assertTrue(node.v_name != 'trajectory') if 'run_' in node.v_full_name: self.assertTrue('.runs.' in node.v_full_name) remove_data()
def test_file_translation(self): filename = make_temp_dir('to_new_tree.hdf5') mytraj = Trajectory('SCRATCH', filename=filename) mytraj.f_add_parameter('Test.Group.Test', 42) mytraj.f_add_derived_parameter('trajectory.saaaa',33) mytraj.f_add_derived_parameter('trajectory.intraj.dpar1',33) mytraj.f_add_derived_parameter('run_00000008.inrun.dpar2',33) mytraj.f_add_derived_parameter('run_00000001.inrun.dpar3',35) mytraj.f_add_result('trajectory.intraj.res1',33) mytraj.f_add_result('run_00000008.inrun.res1',33) mytraj.f_store() mytraj.f_migrate(new_name=mytraj.v_name + 'PETER', in_store=True) mytraj.f_store() fu=FileUpdater(filename=filename, backup=True) fu.update_file() mytraj = Trajectory(name=mytraj.v_name, add_time=False, filename=filename) mytraj.f_load(load_parameters=2, load_derived_parameters=2, load_results=2) for node in mytraj.f_iter_nodes(): self.assertTrue(node.v_name != 'trajectory') if 'run_' in node.v_full_name: self.assertTrue('.runs.' in node.v_full_name) remove_data()
def tearDown(self): remove_data()
def tearDown(self): if hasattr(self, 'env') and hasattr(self.env, 'f_disable_logging'): self.env.f_disable_logging() self.clear_handlers() remove_data()