def call_transcript_prediction_stringtie(args_list):
"""
wrapper for submitting jobs to pygrid
"""
from rnaseq_align_assembly import transcript_assembly as tsa
mmr_read_dir, organism_name, trans_pred_out_dir = args_list
tsa.run_stringtie(organism_name, mmr_read_dir, trans_pred_out_dir)
return "done"
def call_transcript_prediction_stringtie(args_list):
"""
wrapper for submitting jobs to pygrid
"""
from rnaseq_align_assembly import transcript_assembly as tsa
mmr_read_dir, organism_name, trans_pred_out_dir = args_list
tsa.run_stringtie(organism_name, mmr_read_dir, trans_pred_out_dir)
return "done"
def call_transcript_prediction_stringtie(args_list):
"""
wrapper for submitting jobs to pygrid
"""
from rnaseq_align_assembly import transcript_assembly as tsa
mmr_read_dir, organism_name, trans_pred_out_dir = args_list
mmr_read_file = "%s/%s_Aligned_mmr_sortbyCoord.bam" % (mmr_read_dir, organism_name)
os.chdir(trans_pred_out_dir)
tsa.run_stringtie(mmr_read_file)
return "done"