Python _fastq_sniffer Exemples

Exemple #1

Fichier : test_fastq.py Projet : hainm/scikit-bio

 def test_negatives(self):
     for fp in self.negatives:
         self.assertEqual(_fastq_sniffer(fp), (False, {}))

Exemple #2

Fichier : test_fastq.py Projet : hainm/scikit-bio

 def test_positives(self):
     for fp in self.positives:
         self.assertEqual(_fastq_sniffer(fp), (True, {}))

Exemple #3

 def test_negatives(self):
     for fp in self.negatives:
         self.assertEqual(_fastq_sniffer(fp), (False, {}))

Exemple #4

 def test_illumina_sniffed(self):
     fp = get_data_path('fastq_single_seq_illumina1.8')
     self.assertEqual(_fastq_sniffer(fp), (True, {'variant':
                                                  'illumina1.8'}))

Exemple #5

 def test_positives(self):
     for fp in self.positives:
         self.assertEqual(_fastq_sniffer(fp), (True, {}))