def testFittingAlignmentFromFile(self): with open('data/sequencing/fittingAlignment.txt') as fp: seqs = [l.strip() for l in fp.readlines()] score, align1, align2 = fittingAlignment(seqs[0], seqs[1]) print score print align1 print align2
def testFittingAlignment(self): score, align1, align2 = fittingAlignment('GTAGGCTTAAGGTTA', 'TAGATA') self.assertEqual(2, score) self.assertEqual('TAGGCTTA', align1) self.assertEqual('TAGA--TA', align2)