def testFittingAlignmentFromFile(self):
with open('data/sequencing/fittingAlignment.txt') as fp:
seqs = [l.strip() for l in fp.readlines()]
score, align1, align2 = fittingAlignment(seqs[0], seqs[1])
print score
print align1
print align2
def testFittingAlignmentFromFile(self):
with open('data/sequencing/fittingAlignment.txt') as fp:
seqs = [l.strip() for l in fp.readlines()]
score, align1, align2 = fittingAlignment(seqs[0], seqs[1])
print score
print align1
print align2
def testFittingAlignment(self):
score, align1, align2 = fittingAlignment('GTAGGCTTAAGGTTA', 'TAGATA')
self.assertEqual(2, score)
self.assertEqual('TAGGCTTA', align1)
self.assertEqual('TAGA--TA', align2)
def testFittingAlignment(self):
score, align1, align2 = fittingAlignment('GTAGGCTTAAGGTTA', 'TAGATA')
self.assertEqual(2, score)
self.assertEqual('TAGGCTTA', align1)
self.assertEqual('TAGA--TA', align2)
