def stl_file_maker(file, interval=1.5, threshold=0.35, fname='test.stl', gaussian=1):
'''
This uses the stl_tools numpy2stl in order to convert an array into a 3D printable
model. This cannot take xyz dimensions and cannot make the full 3D model. It makes the
2D image 3D printable.
Parameters:
file : str, name of the file, should be png
interval : float, rate at which points are taken from the image
threshold : float, minimum threshold for intensity value
fname : str, name of exported file
gaussian : int, number of loops of gaussian filtering data goes through
'''
earth_radius = 6371 #km
scale_factor_percent = 0.3
#Does not work with cropped image
#data = io.read_file('2014_05_27__14_38_31_12__SDO_AIA_AIA_304.jp2')
header = io.read_file_header(file+'.jp2')
image = read_png(file+'.png')
km_per_pixel = km_per_pixel(arcs_per_pix=header[0].__getitem__('IMSCL_MP'))
#center points for the earth to scale figure
earth_scale_y = 35
earth_scale_x = image.shape[1] - 35 #px
earth_box = 2
earth_radius_px = earth_radius / km_per_pixel
for xpoint in range(data.shape[0]):
for ypoint in range(data.shape[1]):
if (np.sqrt((xpoint - earth_scale_x)**2 + (ypoint - earth_scale_y)**2) <= earth_radius_px):
data[xpoint][ypoint] = 0.1
elif (((np.absolute(xpoint - (earth_scale_x - earth_scale_y)) < earth_box) & (ypoint < (2. * earth_scale_y)))
or (((np.absolute(ypoint - (2. * earth_scale_y)) < earth_box)) & (xpoint > (earth_scale_x - earth_scale_y)))):
data[xpoint][ypoint] = 0.05
elif (data[xpoint][ypoint] <= threshold):
data[xpoint][ypoint] = 0
else:
data[xpoint][ypoint] = (data[xpoint][ypoint] - threshold) / (1 - threshold)
data = resize(data, (int(data.shape[0]/interval), int(data.shape[1]/interval)))
data = gaussian_filter(data, gaussian)
#dimensions in mm, if scale = 100, then the dimensions will be exact
numpy2stl(data, fname, scale=100, solid=True, max_width=228.6,
max_depth=228.6, max_height=80, force_python=True)
subprocess.call(['bash', 'filemover.sh', fname])
def read_header(cls, filepath):
"""Attempts to detect the datasource type and returns meta-information
for that particular datasource."""
header = read_file_header(filepath)
for cls in Map.__subclasses__():
if cls.is_datasource_for(header):
properties = cls.get_properties(header)
properties['header'] = header
return properties
def read_header(cls, filepath):
"""Attempts to detect the datasource type and returns meta-information
for that particular datasource."""
header = read_file_header(filepath)
for cls in Map.__subclasses__():
if cls.is_datasource_for(header):
properties = cls.get_properties(header)
properties['header'] = header
return properties
def __init__(self, *args, **kwargs):
"""Creates a new MapHeader instance"""
if isinstance(args[0], basestring):
# filepath
from sunpy.io import read_file_header
tags = read_file_header(args[0])
else:
# dictionary
tags = args[0]
# Store all keys as upper-case to allow for case-insensitive indexing
tags = dict((k.upper(), v) for k, v in tags.items())
args = (tags,) + args[1:]
dict.__init__(self, *args, **kwargs)
def __init__(self, *args, **kwargs):
"""Creates a new MapHeader instance"""
if isinstance(args[0], basestring):
# filepath
from sunpy.io import read_file_header
tags = read_file_header(args[0])
else:
# dictionary
tags = args[0]
# Store all keys as upper-case to allow for case-insensitive indexing
tags = dict((k.upper(), v) for k, v in tags.items())
args = (tags, ) + args[1:]
dict.__init__(self, *args, **kwargs)
def get_header(self, filepath):
"""
Reads the header from the file and sanitizes it to Fits standards.
Parameters
----------
filepath : `str`
The file to be read
Returns
-------
headers : list
A list of headers read from the file
"""
sunpyhead = read_file_header(filepath)
for subhead in sunpyhead:
# Remove newlines from comment and history
if 'comment' in subhead:
subhead['comment'] = subhead['comment'].replace("\n", "")
if 'history' in subhead:
subhead['history'] = subhead['history'].replace("\n", "")
badkeys = []
# dumps header keywords that are NaN
for key, value in subhead.items():
if type(value) in (int, float):
if np.isnan(value):
badkeys += [key]
for key in badkeys:
subhead.pop(key, None)
return sunpyhead
def file_finder(date, local=True, index=0):
'''
This function takes in the date from the 3Dplot.py. It then uses this date to
access the website that contains all of the XRT images. It uses a findFiles.sh bash
script that attempts to download images of a certain url. It attempts to match an
image with a date and if successful downloads the images for that date. It then turns
the first image into an array and a header. If it was unsuccessful, it iterates
through dates until it finds a day with pictures
'''
date = date
print("initial date is: %s" % date)
dirname = []
year_file = date[0:4]
month_file = date[5:7]
day_file = date[8:10]
internet_dir = 'solar.physics.montana.edu/HINODE/XRT/SCIA/synop_official/'
local_dir = '/archive/hinode/xrt/level2/synoptics/'
if (local):
dir = local_dir
else:
dir = internet_dir
counter = 0
while len(dirname) <= 0:
#calling bash script
if (not local):
subprocess.call(
['bash', 'findFiles.sh', year_file, month_file, day_file])
date_file = year_file + '/' + month_file + '/' + day_file + '/'
#loop through files in the directory of year, month, and day finding all files/dirs
for dirnames in os.walk(dir + date_file):
counter += 1
dirname.append(dirnames)
print(year_file, month_file, day_file)
print(counter)
#iterates through dates if initial date is unsuccessful
if counter <= 0:
if ((int(month_file) == 2) & (int(day_file) >= 28)):
day_file = '0' + str(1)
month_file = '0' + str(3)
elif (((int(month_file) == 1) or (int(month_file) == 3) or
(int(month_file) == 5) or (int(month_file) == 7) or
(int(month_file) == 8) or (int(month_file) == 10))
& (int(day_file) >= 31)):
day_file = '0' + str(1)
if (int(month_file) < 9):
month_file = '0' + str(int(month_file) + 1)
else:
month_file = str(int(month_file) + 1)
elif (((int(month_file) == 4) or (int(month_file) == 6) or
(int(month_file) == 9) or (int(month_file) == 11)) &
(int(day_file) >= 30)):
day_file = '0' + str(1)
if (int(month_file) < 9):
month_file = '0' + str(int(month_file) + 1)
else:
month_file = str(int(month_file) + 1)
elif ((int(month_file) == 12) and (int(day_file) >= 31)):
day_file = '0' + str(1)
month_file = '0' + str(1)
year_file = str(int(year_file) + 1)
else:
if (int(day_file) < 9):
day_file = '0' + str(int(day_file) + 1)
else:
day_file = str(int(day_file) + 1)
date_file = year_file + '/' + month_file + '/' + day_file + '/'
print('date of image: %s' % date_file)
if (local):
index = 3 * index + 2
#picks first image in first directory
Hname = str(dirname[0][1][0])
filename = str(dirname[1][2][index])
#uses sunpy to read .jp2 file into data and header
data = io.read_file(dir + date_file + Hname + '/' + filename)
header = io.read_file_header(dir + date_file + Hname + '/' + filename)
return data, header
def file_finder(date, local=True, index=0):
'''
This function takes in the date from the 3Dplot.py. It then uses this date to
access the website that contains all of the XRT images. It uses a findFiles.sh bash
script that attempts to download images of a certain url. It attempts to match an
image with a date and if successful downloads the images for that date. It then turns
the first image into an array and a header. If it was unsuccessful, it iterates
through dates until it finds a day with pictures
'''
date = date
print("initial date is: %s" % date)
dirname = []
year_file = date[0:4]
month_file = date[5:7]
day_file = date[8:10]
#This is the path that the file is in and that the image will download to
dir_path = os.path.dirname(os.path.realpath(__file__))
internet_dir = 'solar.physics.montana.edu/HINODE/XRT/SCIA/synop_official/'
local_dir = '/archive/hinode/xrt/level2/synoptics/'
if (local):
dir = local_dir
else:
dir = internet_dir
counter = 0
while len(dirname) <= 0:
#calling bash script
if (not local):
#This uses the wget function to access the web page.
#-r means it does so recursively so that it gets all the files in the directory
#-np means no parent, so that it does not ascend to the parent directory and download all the images
#-A means accept list
#3 inputs from imageFinder.py are given that specify the date and name of the image
command = 'wget -r -np -A .jp2 http://solar.physics.montana.edu/HINODE/XRT/SCIA/synop_official/' + year_file + '/' + month_file + '/' + day_file + '/'
os.system(command)
date_file = year_file + '/' + month_file + '/' + day_file + '/'
#loop through files in the directory of year, month, and day finding all files/dirs
for dirnames in os.walk(dir + date_file):
counter += 1
dirname.append(dirnames)
print(year_file, month_file, day_file)
print(counter)
#iterates through dates if initial date is unsuccessful
if counter <= 0:
if ((int(month_file) == 2) & (int(day_file) >= 28)):
day_file = '0' + str(1)
month_file = '0' + str(3)
elif (((int(month_file) == 1) or (int(month_file) == 3) or
(int(month_file) == 5) or (int(month_file) == 7) or
(int(month_file) == 8) or (int(month_file) == 10))
& (int(day_file) >= 31)):
day_file = '0' + str(1)
if (int(month_file) < 9):
month_file = '0' + str(int(month_file) + 1)
else:
month_file = str(int(month_file) + 1)
elif (((int(month_file) == 4) or (int(month_file) == 6) or
(int(month_file) == 9) or (int(month_file) == 11)) &
(int(day_file) >= 30)):
day_file = '0' + str(1)
if (int(month_file) < 9):
month_file = '0' + str(int(month_file) + 1)
else:
month_file = str(int(month_file) + 1)
elif ((int(month_file) == 12) and (int(day_file) >= 31)):
day_file = '0' + str(1)
month_file = '0' + str(1)
year_file = str(int(year_file) + 1)
else:
if (int(day_file) < 9):
day_file = '0' + str(int(day_file) + 1)
else:
day_file = str(int(day_file) + 1)
date_file = year_file + '/' + month_file + '/' + day_file + '/'
print('date of image: %s' % date_file)
if (local):
index = 3 * index + 2
#picks first image in first directory
Hname = str(dirname[0][1][0])
filename = str(dirname[1][2][index])
#uses sunpy to read .jp2 file into data and header
data = io.read_file(dir + date_file + Hname + '/' + filename)
header = io.read_file_header(dir + date_file + Hname + '/' + filename)
#removes the downloaded files from the online archive
os.system('rm -r solar.physics.montana.edu')
os.system('rm -r wget-log')
return data, header