def test_can_add(self):
bedpe = [
'1', '200', '300', '2', '300', '400', '777_1', '57', '+', '-',
'BND', 'PASS', '.', '.', '.', '.', '.', '.', 'MISSING',
'SVTYPE=BND;AF=0.2'
]
b = Bedpe(bedpe)
c = Cluster()
c.chrom_a = b.c1
c.chrom_b = b.c2
c.min_a = b.s1
c.max_a = b.e1
c.min_b = b.s2
c.max_b = b.e2
c.strand_a = b.o1
c.strand_b = b.o2
self.assertTrue(c.can_add(b, 1))
c.size = 1
c.sv_event = 'DEL'
self.assertFalse(c.can_add(b, 1))
c.sv_event = 'BND'
self.assertTrue(c.can_add(b, 1))
c.chrom_a = 'X'
self.assertFalse(c.can_add(b, 1))
c.chrom_a = b.c1
c.chrom_b = 'X'
self.assertFalse(c.can_add(b, 1))
c.chrom_b = b.c2
c.min_a = 305
self.assertFalse(c.can_add(b, 1))
c.min_a = b.s1
c.max_a = 150
self.assertFalse(c.can_add(b, 1))
c.max_a = b.e1
c.min_b = 405
self.assertFalse(c.can_add(b, 1))
c.min_b = b.s1
c.max_b = 150
self.assertFalse(c.can_add(b, 1))
def test_can_add(self):
bedpe = [ '1', '200', '300', '2', '300', '400', '777_1', '57', '+', '-', 'BND', 'PASS', 'MISSING', 'SVTYPE=BND;AF=0.2' ]
b = Bedpe(bedpe)
c = Cluster()
c.chrom_a = b.c1
c.chrom_b = b.c2
c.min_a = b.s1
c.max_a = b.e1
c.min_b = b.s2
c.max_b = b.e2
c.strand_a = b.o1
c.strand_b = b.o2
self.assertTrue(c.can_add(b, 1))
c.size = 1
c.sv_event = 'DEL'
self.assertFalse(c.can_add(b, 1))
c.sv_event = 'BND'
self.assertTrue(c.can_add(b, 1))
c.chrom_a = 'X'
self.assertFalse(c.can_add(b, 1))
c.chrom_a = b.c1
c.chrom_b = 'X'
self.assertFalse(c.can_add(b, 1))
c.chrom_b = b.c2
c.min_a = 305
self.assertFalse(c.can_add(b, 1))
c.min_a = b.s1
c.max_a = 150
self.assertFalse(c.can_add(b, 1))
c.max_a = b.e1
c.min_b = 405
self.assertFalse(c.can_add(b, 1))
c.min_b = b.s1
c.max_b = 150
self.assertFalse(c.can_add(b, 1))