class child(twf.TableForm):
action = 'post_edit'
id = twf.HiddenField()
subject = twf.LabelField()
exam = twf.LabelField()
timestamp = twf.LabelField()
notes = twf.TextArea(validator=twc.StringLengthValidator(max=2048),
rows=10,
cols=40)
class operator(twf.TableLayout):
uid = twf.SingleSelectField(label="SUNetID",
options=twc.Deferred(user_list),
validator=twc.Any(
twc.StringLengthValidator(min=0,
max=0),
UserExists()))
class subject(twf.TableLayout):
id = twf.HiddenField()
code = twf.TextField(validator=twc.StringLengthValidator(max=31))
firstname = twf.TextField(
label="First Name",
validator=twc.StringLengthValidator(max=63))
lastname = twf.TextField(
label="Last Name", validator=twc.StringLengthValidator(max=63))
dob = twf.TextField(
label="Date of Birth",
validator=twc.DateTimeValidator(format="%m/%d/%Y"))
class NewTrackHub(twf.TableForm):
#fields
name = twf.TextField(label_text="Name : ", help_text="no space, use '_'")
assembly = twf.LabelField(
help_text=" is the assembly related to these files")
files = twf.MultipleSelectField(label_text="Files used : ")
extension = twf.LabelField(
help_text=" is your files extensions for this TrackHub")
submit = twf.SubmitButton(value="Visualise")
class EditMeas(twf.TableForm):
#fields
IDselected = twf.HiddenField(label_text="ID selected :")
name = twf.TextField(label_text="Name :",
placeholder="Measurement name...",
validator=twc.Required)
description = twf.TextArea(label_text="Description :")
samples = twf.MultipleSelectField(
label_text="Your samples : ",
help_text="You can add some of your existing data to this project.")
status_type = twf.CheckBox(
label_text="Privacy : ",
help_text=
"Check it if you want a public data (available for UCSC visualisation)"
)
type = twf.CheckBox(label_text="Raw data : ",
help_text="Check it is a raw data")
#parents management
parents = twf.MultipleSelectField(
label_text="Parents : ", help_text="Parent(s) of this measurement.")
uploaded = twf.LabelField(
help_text=
"is attached to this measurement. If you want to change, it's better to delete this measurement and create a new one."
)
url_path = twf.TextField(label_text="File's url",
placeholder="http://www....")
submit = twf.SubmitButton(value="Edit my measurement")
def build_form_edit_th(t_length):
form_widget = MyForm()
form_widget.submit = twf.SubmitButton(value="Edit the colors")
all_fields = []
cpt = 1
for i in range(t_length / 2):
all_fields.append(twf.LabelField(id="Track_name_" + str(cpt)))
all_fields.append(
twf.TextField(id="Color_Track_" + str(cpt),
help_text=" (R,G,B colors)"))
cpt += 1
form_widget.children = all_fields
return form_widget
class child(twf.TableForm):
action = 'post_edit'
id = twf.HiddenField()
series = twf.LabelField()
acq = twf.LabelField()
description = twf.TextArea(validator=twc.StringLengthValidator(
max=255))
notes = twf.LabelField()
psd = twf.LabelField()
physio_flag = twf.LabelField()
tr = twf.LabelField()
te = twf.LabelField()
flip_angle = twf.LabelField()
num_timepoints = twf.LabelField()
num_slices = twf.LabelField()
protocol_name = twf.LabelField()
scan_type = twf.LabelField()
num_bands = twf.LabelField()
prescribed_duration = twf.LabelField()
mm_per_vox = twf.LabelField()
fov = twf.LabelField()
acquisition_matrix = twf.LabelField()
phase_encode_undersample = twf.LabelField()
slice_encode_undersample = twf.LabelField()
class child(twf.GridLayout):
extra_reps = 0
id = twf.LinkField(link='detail?id=$', text='View', label=None)
a = twf.LabelField()
b = twf.LabelField()
class child(twf.GridLayout):
id = twf.LinkField(link='order?id=$', text='Edit', label=None)
name = twf.LabelField()
status = twf.LabelField()
customer = twf.LabelField()
assignee = twf.LabelField()
def edit_form(user_lab, owner, id_object):
'''
to edit dynamic form
'''
lab = DBSession.query(Labs).filter(Labs.name == user_lab).first()
#static lists
list_static_samples = [
twf.HiddenField(id="IDselected", label_text="ID selected :"),
twf.SingleSelectField(
id="project",
label_text="Your projects : ",
help_text="the project which contains your sample is selected",
prompt_text=None),
twf.TextField(id="name", label_text="Name :", validator=twc.Required),
twf.SingleSelectField(id="type",
label_text="Type : ",
help_text="What technique do you use ?",
prompt_text=None),
twf.TextArea(
id="protocole",
label_text="Protocole :",
),
twf.MultipleSelectField(id="measurements",
label_text="Attached measurement(s) : ")
]
list_static_measurements = [
twf.HiddenField(id="IDselected", label_text="ID selected :"),
twf.TextField(id="name",
label_text="Name :",
placeholder="Measurement name...",
validator=twc.Required),
twf.TextArea(id="description", label_text="Description :"),
twf.MultipleSelectField(
id="samples",
label_text="Your samples : ",
help_text="You can add some of your existing data to this project."
),
twf.CheckBox(
id="status_type",
label_text="Privacy : ",
help_text=
"Check to have it available from outside EPFL (required for UCSC visualisation)"
),
twf.CheckBox(id="type",
label_text="Raw data : ",
help_text="Check if raw data"),
twf.MultipleSelectField(id="parents",
label_text="Parents : ",
help_text="Parent(s) of this measurement."),
twf.LabelField(
id="uploaded",
help_text=
"is attached to this measurement. If you want to change, it's better to delete this measurement and create a new one."
),
twf.TextField(
id="url_path",
help_text=
"If you want to add a new URL, your old URL will be stored into the description",
placeholder="http://www...")
#twf.CheckBox(id="url_up", label_text="I want to upload the file from this URL : ",
#help_text="tick it if you want to download it in BioRepo")
]
list_dynamic_samples = []
list_dynamic_measurements = []
if lab is None:
print "----- no dynamic fields detected ---------"
list_fields = [
list_static_samples, list_dynamic_samples,
list_static_measurements, list_dynamic_measurements
]
return list_fields
else:
if owner == "sample":
object_edited = DBSession.query(Samples).filter(
Samples.id == int(id_object)).first()
list_dynamic = list_dynamic_samples
tag = "samples"
elif owner == "meas":
object_edited = DBSession.query(Measurements).filter(
Measurements.id == int(id_object)).first()
list_dynamic = list_dynamic_measurements
tag = "measurements"
else:
print "----------------- owner error : ", owner, " <----owner --------------------"
raise
if object_edited is not None:
list_dynamic_attributes = object_edited.attributs
for att in list_dynamic_attributes:
if att.deprecated == False:
twf_type = convert_widget(att.widget)
twf_type.id = att.key
list_a_values = att.values
if att.widget == "textfield" or att.widget == "textarea" or att.widget == "hiding_textfield" or att.widget == "hiding_textarea":
for v in list_a_values:
if hasattr(v, tag):
value_object = getattr(v, tag)
if object_edited in value_object:
twf_type.value = v.value
list_dynamic.append(twf_type)
elif att.widget == "checkbox" or att.widget == "hiding_checkbox":
for v in list_a_values:
if hasattr(v, tag):
value_object = getattr(v, tag)
if object_edited in value_object:
#dynamic boolean are stored in varchar in the db, we have to cast them in boolean for the display
value_2_display = check_boolean(v.value)
twf_type.value = value_2_display
list_dynamic.append(twf_type)
elif att.widget == "multipleselectfield" or att.widget == "hiding_multipleselectfield":
list_possible_values = []
for v in list_a_values:
list_possible_values.append(v.value)
twf_type.options = list_possible_values
selected_values = []
for v in list_a_values:
if hasattr(v, tag):
value_object = getattr(v, tag)
if object_edited in value_object:
selected_values.append(v.value)
twf_type.value = selected_values
list_dynamic.append(twf_type)
elif att.widget == "singleselectfield" or att.widget == "hiding_singleselectfield":
list_possible_values = []
for v in list_a_values:
if v.value not in list_possible_values:
list_possible_values.append(v.value)
twf_type.options = list_possible_values
for v in list_a_values:
if hasattr(v, tag):
value_object = getattr(v, tag)
if object_edited in value_object:
twf_type.value = v.value
list_dynamic.append(twf_type)
else:
print "Your ", owner, " was not found. ID problem. id :", id_object
raise
list_fields = [
list_static_samples, list_dynamic_samples,
list_static_measurements, list_dynamic_measurements
]
return list_fields
class child(twf.TableForm):
action = 'post_edit'
id = twf.HiddenField()
owner = twf.SingleSelectField(options=twc.Deferred(get_owners), validator=twc.Required)
name = twf.TextField(validator=twc.All(twc.StringLengthValidator(min=1), ExperimentDoesntExist('owner')))
timestamp = twf.LabelField()
class child(twf.TableForm):
action = 'post_edit'
uid = twf.LabelField(label='SUNet ID', validator=None)
firstname = twf.TextField(label='First Name', validator=twc.StringLengthValidator(min=1))
lastname = twf.TextField(label='Last Name', validator=twc.StringLengthValidator(min=1))
