exit(12) else: if isinstance(cwlContent['baseCommand'], list): script = ' '.join(cwlContent['baseCommand']) else: script = cwlContent['baseCommand'] else: exit(11) if (imountPoint == '/') or (omountPoint == '/'): exit(13) if workingDir == '': workingDir = '/' uf.imageStore(softName, softVersion, image, script, user, visibility, workingDir, imountPoint, omountPoint, description, cwlPath, biotools, doiFile, original, docker_or_local, covid19, instructions, gpu) if 'inputs' not in cwlContent: cwlContent['inputs'] = [] if isinstance(cwlContent['inputs'], dict): exit_value = uf.inputStoreDict(softName, softVersion, cwlContent['inputs']) elif isinstance(cwlContent['inputs'], list): exit_value = uf.inputStoreList(softName, softVersion, cwlContent['inputs']) else: exit_value = 100 exit(exit_value)
uniqid = str(uniqid) sql = "INSERT INTO operation_locks(id,operation) VALUES ('" + uniqid + "','image_upload')" cur.execute(sql) conn.commit() command = [ 'docker-tar-push', 'https://' + registry, imagePath, regAuth['username'], regAuth['password'] ] try: out = subprocess.check_output(command, stderr=subprocess.STDOUT) print(out) except subprocess.CalledProcessError as exc: print(exc.output) exit(8) sql = "DELETE FROM operation_locks WHERE id='" + uniqid + "'" cur.execute(sql) conn.commit() uf.imageStore(softName, softVersion, imageFull, script, user, visibility, workingDir, imountPoint, omountPoint, description, cwlPath, biotools, doiFile, mpi, original, dockerHub, covid19, instructions) if 'inputs' not in cwlContent: cwlContent['inputs'] = [] exit_value = uf.inputStore(softName, softVersion, cwlContent['inputs']) exit(exit_value)