exit(12)
else:
if isinstance(cwlContent['baseCommand'], list):
script = ' '.join(cwlContent['baseCommand'])
else:
script = cwlContent['baseCommand']
else:
exit(11)
if (imountPoint == '/') or (omountPoint == '/'):
exit(13)
if workingDir == '':
workingDir = '/'
uf.imageStore(softName, softVersion, image, script, user, visibility,
workingDir, imountPoint, omountPoint, description, cwlPath,
biotools, doiFile, original, docker_or_local, covid19,
instructions, gpu)
if 'inputs' not in cwlContent:
cwlContent['inputs'] = []
if isinstance(cwlContent['inputs'], dict):
exit_value = uf.inputStoreDict(softName, softVersion, cwlContent['inputs'])
elif isinstance(cwlContent['inputs'], list):
exit_value = uf.inputStoreList(softName, softVersion, cwlContent['inputs'])
else:
exit_value = 100
exit(exit_value)
uniqid = str(uniqid)
sql = "INSERT INTO operation_locks(id,operation) VALUES ('" + uniqid + "','image_upload')"
cur.execute(sql)
conn.commit()
command = [
'docker-tar-push', 'https://' + registry, imagePath,
regAuth['username'], regAuth['password']
]
try:
out = subprocess.check_output(command, stderr=subprocess.STDOUT)
print(out)
except subprocess.CalledProcessError as exc:
print(exc.output)
exit(8)
sql = "DELETE FROM operation_locks WHERE id='" + uniqid + "'"
cur.execute(sql)
conn.commit()
uf.imageStore(softName, softVersion, imageFull, script, user, visibility,
workingDir, imountPoint, omountPoint, description, cwlPath,
biotools, doiFile, mpi, original, dockerHub, covid19,
instructions)
if 'inputs' not in cwlContent:
cwlContent['inputs'] = []
exit_value = uf.inputStore(softName, softVersion, cwlContent['inputs'])
exit(exit_value)