def visual_index(request, **kwargs): all_neurons, search_form = get_form_and_neurons(request, kwargs['project_id'], kwargs) # From: http://docs.djangoproject.com/en/1.0/topics/pagination/ paginator = Paginator(all_neurons, 20) if 'page' in kwargs: page = kwargs['page'] or 1 else: try: page = int(request.GET.get('page', '1')) except ValueError: page = 1 # If page request (9999) is out of range, deliver last page of results. try: neurons = paginator.page(page) except (EmptyPage, InvalidPage): neurons = paginator.page(paginator.num_pages) return my_render_to_response( request, 'vncbrowser/visual_index.html', { 'sorted_neurons': neurons.object_list, 'sorted_neurons_page': neurons, 'project_id': kwargs['project_id'], 'catmaid_url': settings.CATMAID_URL, 'user': kwargs['logged_in_user'], 'search_form': search_form })
def visual_index(request, **kwargs): all_neurons, search_form = get_form_and_neurons( request, kwargs['project_id'], kwargs ) # From: http://docs.djangoproject.com/en/1.0/topics/pagination/ paginator = Paginator(all_neurons, 5) if 'page' in kwargs: page = kwargs['page'] or 1 else: try: page = int(request.GET.get('page', '1')) except ValueError: page = 1 # If page request (9999) is out of range, deliver last page of results. try: neurons = paginator.page(page) except (EmptyPage, InvalidPage): neurons = paginator.page(paginator.num_pages) return my_render_to_response(request, 'vncbrowser/visual_index.html', {'sorted_neurons': neurons.object_list, 'sorted_neurons_page' : neurons, 'project_id': kwargs['project_id'], 'catmaid_url': settings.CATMAID_URL, 'user': kwargs['logged_in_user'], 'search_form': search_form })
def login(request): return my_render_to_response(request, 'vncbrowser/login.html', {'return_url': request.GET.get('return_url', '/'), 'project_id': 0, 'catmaid_url': settings.CATMAID_URL, 'catmaid_login': settings.CATMAID_URL+'model/login.php'})
def visual_index(request, **kwargs): all_neurons, search_form = get_form_and_neurons(request, kwargs["project_id"], kwargs) # From: http://docs.djangoproject.com/en/1.0/topics/pagination/ paginator = Paginator(all_neurons, 20) if "page" in kwargs: page = kwargs["page"] or 1 else: try: page = int(request.GET.get("page", "1")) except ValueError: page = 1 # If page request (9999) is out of range, deliver last page of results. try: neurons = paginator.page(page) except (EmptyPage, InvalidPage): neurons = paginator.page(paginator.num_pages) return my_render_to_response( request, "vncbrowser/visual_index.html", { "sorted_neurons": neurons.object_list, "sorted_neurons_page": neurons, "project_id": kwargs["project_id"], "catmaid_url": settings.CATMAID_URL, "user": kwargs["logged_in_user"], "search_form": search_form, }, )
def login(request): return my_render_to_response( request, 'vncbrowser/login.html', { 'return_url': request.GET.get('return_url', '/'), 'project_id': 0, 'catmaid_url': settings.CATMAID_URL, 'catmaid_login': settings.CATMAID_URL + 'model/login.php' })
def multiple_presynaptic_terminals(request, project_id=None, logged_in_user=None): p = get_object_or_404(Project, pk=project_id) tcs = TreenodeConnector.objects.filter(project__id=project_id, relation__relation_name='presynaptic_to').values('connector').annotate(number=models.Count('connector')).filter(number__gt=1) return my_render_to_response(request, 'vncbrowser/multiple_presynaptic_terminals.html', {'project_id': p.id, 'catmaid_url': settings.CATMAID_URL, 'user': logged_in_user, 'stacks': p.stacks.all(), 'connector_counts': tcs})
def index(request, **kwargs): all_neurons, search_form = get_form_and_neurons(request, kwargs['project_id'], kwargs) return my_render_to_response(request, 'vncbrowser/index.html', {'all_neurons_list': all_neurons, 'project_id': kwargs['project_id'], 'catmaid_url': settings.CATMAID_URL, 'user': kwargs['logged_in_user'], 'search_form': search_form})
def index(request, **kwargs): all_neurons, search_form = get_form_and_neurons(request, kwargs['project_id'], kwargs) return my_render_to_response( request, 'vncbrowser/index.html', { 'all_neurons_list': all_neurons, 'project_id': kwargs['project_id'], 'catmaid_url': settings.CATMAID_URL, 'user': kwargs['logged_in_user'], 'search_form': search_form })
def line(request, project_id=None, line_id=None, logged_in_user=None): p = get_object_or_404(Project, pk=project_id) l = get_object_or_404(ClassInstance, pk=line_id, project=p, class_column__class_name='driver_line') sorted_neurons = ClassInstance.objects.filter( cici_via_b__relation__relation_name='expresses_in', cici_via_b__class_instance_a=l).order_by('name') return my_render_to_response(request, 'vncbrowser/line.html', {'line': l, 'project_id': p.id, 'catmaid_url': settings.CATMAID_URL, 'user': logged_in_user, 'neurons': sorted_neurons})
def index(request, **kwargs): all_neurons, search_form = get_form_and_neurons(request, kwargs["project_id"], kwargs) return my_render_to_response( request, "vncbrowser/index.html", { "all_neurons_list": all_neurons, "project_id": kwargs["project_id"], "catmaid_url": settings.CATMAID_URL, "user": kwargs["logged_in_user"], "search_form": search_form, }, )
def view(request, project_id=None, neuron_id=None, neuron_name=None, logged_in_user=None): p = get_object_or_404(Project, pk=project_id) # FIXME: add the class name as well if neuron_id: n = get_object_or_404(ClassInstance, pk=neuron_id, project=project_id) else: n = get_object_or_404(ClassInstance, name=neuron_name, project=project_id) lines = ClassInstance.objects.filter( project=p, cici_via_a__class_instance_b=n, cici_via_a__relation__relation_name='expresses_in').all() outgoing = n.all_neurons_downstream(project_id) incoming = n.all_neurons_upstream(project_id) outgoing = [ x for x in outgoing if not re.match('orphaned (pre|post)$', x['name']) ] incoming = [ x for x in incoming if not re.match('orphaned (pre|post)$', x['name']) ] skeletons = ClassInstance.objects.filter( project=p, cici_via_a__relation__relation_name='model_of', class_column__class_name='skeleton', cici_via_a__class_instance_b=n) return my_render_to_response( request, 'vncbrowser/view.html', { 'neuron': n, 'lines': lines, 'skeletons': skeletons, 'project_id': project_id, 'catmaid_url': settings.CATMAID_URL, 'user': logged_in_user, 'cell_body_choices': CELL_BODY_CHOICES, 'incoming': incoming, 'outgoing': outgoing })
def line(request, project_id=None, line_id=None, logged_in_user=None): p = get_object_or_404(Project, pk=project_id) l = get_object_or_404(ClassInstance, pk=line_id, project=p, class_column__class_name="driver_line") sorted_neurons = ClassInstance.objects.filter( cici_via_b__relation__relation_name="expresses_in", cici_via_b__class_instance_a=l ).order_by("name") return my_render_to_response( request, "vncbrowser/line.html", { "line": l, "project_id": p.id, "catmaid_url": settings.CATMAID_URL, "user": logged_in_user, "neurons": sorted_neurons, }, )
def line(request, project_id=None, line_id=None, logged_in_user=None): p = get_object_or_404(Project, pk=project_id) l = get_object_or_404(ClassInstance, pk=line_id, project=p, class_column__class_name='driver_line') sorted_neurons = ClassInstance.objects.filter( cici_via_b__relation__relation_name='expresses_in', cici_via_b__class_instance_a=l).order_by('name') return my_render_to_response( request, 'vncbrowser/line.html', { 'line': l, 'project_id': p.id, 'catmaid_url': settings.CATMAID_URL, 'user': logged_in_user, 'neurons': sorted_neurons })
def view(request, project_id=None, neuron_id=None, neuron_name=None, logged_in_user=None): p = get_object_or_404(Project, pk=project_id) # FIXME: add the class name as well if neuron_id: n = get_object_or_404(ClassInstance, pk=neuron_id, project=project_id) else: n = get_object_or_404(ClassInstance, name=neuron_name, project=project_id) lines = ClassInstance.objects.filter( project=p, cici_via_a__class_instance_b=n, cici_via_a__relation__relation_name="expresses_in" ).all() outgoing = n.all_neurons_downstream(project_id) incoming = n.all_neurons_upstream(project_id) outgoing = [x for x in outgoing if not re.match("orphaned (pre|post)$", x["name"])] incoming = [x for x in incoming if not re.match("orphaned (pre|post)$", x["name"])] skeletons = ClassInstance.objects.filter( project=p, cici_via_a__relation__relation_name="model_of", class_column__class_name="skeleton", cici_via_a__class_instance_b=n, ) return my_render_to_response( request, "vncbrowser/view.html", { "neuron": n, "lines": lines, "skeletons": skeletons, "project_id": project_id, "catmaid_url": settings.CATMAID_URL, "user": logged_in_user, "cell_body_choices": CELL_BODY_CHOICES, "incoming": incoming, "outgoing": outgoing, }, )
def view(request, project_id=None, neuron_id=None, neuron_name=None, logged_in_user=None): p = get_object_or_404(Project, pk=project_id) # FIXME: add the class name as well if neuron_id: n = get_object_or_404(ClassInstance, pk=neuron_id, project=project_id) else: n = get_object_or_404(ClassInstance, name=neuron_name, project=project_id) lines = ClassInstance.objects.filter( project=p, cici_via_a__class_instance_b=n, cici_via_a__relation__relation_name='expresses_in').all() skeletons = ClassInstance.objects.filter( project=p, cici_via_a__relation__relation_name='model_of', class_column__class_name='skeleton', cici_via_a__class_instance_b=n) outgoing = n.all_neurons_downstream(project_id, skeletons) incoming = n.all_neurons_upstream(project_id, skeletons) outgoing = [x for x in outgoing if not x['name'].startswith('orphaned ')] incoming = [x for x in incoming if not x['name'].startswith('orphaned ')] return my_render_to_response(request, 'vncbrowser/view.html', {'neuron': n, 'neuron_class': findBrackets( n.name ), 'lines': lines, 'skeletons': skeletons, 'project_id': project_id, 'catmaid_url': settings.CATMAID_URL, 'user': logged_in_user, 'cell_body_choices': CELL_BODY_CHOICES, 'incoming': incoming, 'outgoing': outgoing, 'wiki_base_url': p.wiki_base_url } )