def visual_index(request, **kwargs):
all_neurons, search_form = get_form_and_neurons(request,
kwargs['project_id'],
kwargs)
# From: http://docs.djangoproject.com/en/1.0/topics/pagination/
paginator = Paginator(all_neurons, 20)
if 'page' in kwargs:
page = kwargs['page'] or 1
else:
try:
page = int(request.GET.get('page', '1'))
except ValueError:
page = 1
# If page request (9999) is out of range, deliver last page of results.
try:
neurons = paginator.page(page)
except (EmptyPage, InvalidPage):
neurons = paginator.page(paginator.num_pages)
return my_render_to_response(
request, 'vncbrowser/visual_index.html', {
'sorted_neurons': neurons.object_list,
'sorted_neurons_page': neurons,
'project_id': kwargs['project_id'],
'catmaid_url': settings.CATMAID_URL,
'user': kwargs['logged_in_user'],
'search_form': search_form
})
def visual_index(request, **kwargs):
all_neurons, search_form = get_form_and_neurons( request,
kwargs['project_id'],
kwargs )
# From: http://docs.djangoproject.com/en/1.0/topics/pagination/
paginator = Paginator(all_neurons, 5)
if 'page' in kwargs:
page = kwargs['page'] or 1
else:
try:
page = int(request.GET.get('page', '1'))
except ValueError:
page = 1
# If page request (9999) is out of range, deliver last page of results.
try:
neurons = paginator.page(page)
except (EmptyPage, InvalidPage):
neurons = paginator.page(paginator.num_pages)
return my_render_to_response(request,
'vncbrowser/visual_index.html',
{'sorted_neurons': neurons.object_list,
'sorted_neurons_page' : neurons,
'project_id': kwargs['project_id'],
'catmaid_url': settings.CATMAID_URL,
'user': kwargs['logged_in_user'],
'search_form': search_form })
def login(request):
return my_render_to_response(request,
'vncbrowser/login.html',
{'return_url': request.GET.get('return_url', '/'),
'project_id': 0,
'catmaid_url': settings.CATMAID_URL,
'catmaid_login': settings.CATMAID_URL+'model/login.php'})
def visual_index(request, **kwargs):
all_neurons, search_form = get_form_and_neurons(request, kwargs["project_id"], kwargs)
# From: http://docs.djangoproject.com/en/1.0/topics/pagination/
paginator = Paginator(all_neurons, 20)
if "page" in kwargs:
page = kwargs["page"] or 1
else:
try:
page = int(request.GET.get("page", "1"))
except ValueError:
page = 1
# If page request (9999) is out of range, deliver last page of results.
try:
neurons = paginator.page(page)
except (EmptyPage, InvalidPage):
neurons = paginator.page(paginator.num_pages)
return my_render_to_response(
request,
"vncbrowser/visual_index.html",
{
"sorted_neurons": neurons.object_list,
"sorted_neurons_page": neurons,
"project_id": kwargs["project_id"],
"catmaid_url": settings.CATMAID_URL,
"user": kwargs["logged_in_user"],
"search_form": search_form,
},
)
def login(request):
return my_render_to_response(
request, 'vncbrowser/login.html', {
'return_url': request.GET.get('return_url', '/'),
'project_id': 0,
'catmaid_url': settings.CATMAID_URL,
'catmaid_login': settings.CATMAID_URL + 'model/login.php'
})
def multiple_presynaptic_terminals(request, project_id=None, logged_in_user=None):
p = get_object_or_404(Project, pk=project_id)
tcs = TreenodeConnector.objects.filter(project__id=project_id, relation__relation_name='presynaptic_to').values('connector').annotate(number=models.Count('connector')).filter(number__gt=1)
return my_render_to_response(request,
'vncbrowser/multiple_presynaptic_terminals.html',
{'project_id': p.id,
'catmaid_url': settings.CATMAID_URL,
'user': logged_in_user,
'stacks': p.stacks.all(),
'connector_counts': tcs})
def index(request, **kwargs):
all_neurons, search_form = get_form_and_neurons(request,
kwargs['project_id'],
kwargs)
return my_render_to_response(request,
'vncbrowser/index.html',
{'all_neurons_list': all_neurons,
'project_id': kwargs['project_id'],
'catmaid_url': settings.CATMAID_URL,
'user': kwargs['logged_in_user'],
'search_form': search_form})
def index(request, **kwargs):
all_neurons, search_form = get_form_and_neurons(request,
kwargs['project_id'],
kwargs)
return my_render_to_response(
request, 'vncbrowser/index.html', {
'all_neurons_list': all_neurons,
'project_id': kwargs['project_id'],
'catmaid_url': settings.CATMAID_URL,
'user': kwargs['logged_in_user'],
'search_form': search_form
})
def line(request, project_id=None, line_id=None, logged_in_user=None):
p = get_object_or_404(Project, pk=project_id)
l = get_object_or_404(ClassInstance, pk=line_id, project=p, class_column__class_name='driver_line')
sorted_neurons = ClassInstance.objects.filter(
cici_via_b__relation__relation_name='expresses_in',
cici_via_b__class_instance_a=l).order_by('name')
return my_render_to_response(request,
'vncbrowser/line.html',
{'line': l,
'project_id': p.id,
'catmaid_url': settings.CATMAID_URL,
'user': logged_in_user,
'neurons': sorted_neurons})
def index(request, **kwargs):
all_neurons, search_form = get_form_and_neurons(request, kwargs["project_id"], kwargs)
return my_render_to_response(
request,
"vncbrowser/index.html",
{
"all_neurons_list": all_neurons,
"project_id": kwargs["project_id"],
"catmaid_url": settings.CATMAID_URL,
"user": kwargs["logged_in_user"],
"search_form": search_form,
},
)
def view(request,
project_id=None,
neuron_id=None,
neuron_name=None,
logged_in_user=None):
p = get_object_or_404(Project, pk=project_id)
# FIXME: add the class name as well
if neuron_id:
n = get_object_or_404(ClassInstance, pk=neuron_id, project=project_id)
else:
n = get_object_or_404(ClassInstance,
name=neuron_name,
project=project_id)
lines = ClassInstance.objects.filter(
project=p,
cici_via_a__class_instance_b=n,
cici_via_a__relation__relation_name='expresses_in').all()
outgoing = n.all_neurons_downstream(project_id)
incoming = n.all_neurons_upstream(project_id)
outgoing = [
x for x in outgoing if not re.match('orphaned (pre|post)$', x['name'])
]
incoming = [
x for x in incoming if not re.match('orphaned (pre|post)$', x['name'])
]
skeletons = ClassInstance.objects.filter(
project=p,
cici_via_a__relation__relation_name='model_of',
class_column__class_name='skeleton',
cici_via_a__class_instance_b=n)
return my_render_to_response(
request, 'vncbrowser/view.html', {
'neuron': n,
'lines': lines,
'skeletons': skeletons,
'project_id': project_id,
'catmaid_url': settings.CATMAID_URL,
'user': logged_in_user,
'cell_body_choices': CELL_BODY_CHOICES,
'incoming': incoming,
'outgoing': outgoing
})
def line(request, project_id=None, line_id=None, logged_in_user=None):
p = get_object_or_404(Project, pk=project_id)
l = get_object_or_404(ClassInstance, pk=line_id, project=p, class_column__class_name="driver_line")
sorted_neurons = ClassInstance.objects.filter(
cici_via_b__relation__relation_name="expresses_in", cici_via_b__class_instance_a=l
).order_by("name")
return my_render_to_response(
request,
"vncbrowser/line.html",
{
"line": l,
"project_id": p.id,
"catmaid_url": settings.CATMAID_URL,
"user": logged_in_user,
"neurons": sorted_neurons,
},
)
def line(request, project_id=None, line_id=None, logged_in_user=None):
p = get_object_or_404(Project, pk=project_id)
l = get_object_or_404(ClassInstance,
pk=line_id,
project=p,
class_column__class_name='driver_line')
sorted_neurons = ClassInstance.objects.filter(
cici_via_b__relation__relation_name='expresses_in',
cici_via_b__class_instance_a=l).order_by('name')
return my_render_to_response(
request, 'vncbrowser/line.html', {
'line': l,
'project_id': p.id,
'catmaid_url': settings.CATMAID_URL,
'user': logged_in_user,
'neurons': sorted_neurons
})
def view(request, project_id=None, neuron_id=None, neuron_name=None, logged_in_user=None):
p = get_object_or_404(Project, pk=project_id)
# FIXME: add the class name as well
if neuron_id:
n = get_object_or_404(ClassInstance, pk=neuron_id, project=project_id)
else:
n = get_object_or_404(ClassInstance, name=neuron_name, project=project_id)
lines = ClassInstance.objects.filter(
project=p, cici_via_a__class_instance_b=n, cici_via_a__relation__relation_name="expresses_in"
).all()
outgoing = n.all_neurons_downstream(project_id)
incoming = n.all_neurons_upstream(project_id)
outgoing = [x for x in outgoing if not re.match("orphaned (pre|post)$", x["name"])]
incoming = [x for x in incoming if not re.match("orphaned (pre|post)$", x["name"])]
skeletons = ClassInstance.objects.filter(
project=p,
cici_via_a__relation__relation_name="model_of",
class_column__class_name="skeleton",
cici_via_a__class_instance_b=n,
)
return my_render_to_response(
request,
"vncbrowser/view.html",
{
"neuron": n,
"lines": lines,
"skeletons": skeletons,
"project_id": project_id,
"catmaid_url": settings.CATMAID_URL,
"user": logged_in_user,
"cell_body_choices": CELL_BODY_CHOICES,
"incoming": incoming,
"outgoing": outgoing,
},
)
def view(request, project_id=None, neuron_id=None, neuron_name=None, logged_in_user=None):
p = get_object_or_404(Project, pk=project_id)
# FIXME: add the class name as well
if neuron_id:
n = get_object_or_404(ClassInstance, pk=neuron_id, project=project_id)
else:
n = get_object_or_404(ClassInstance, name=neuron_name, project=project_id)
lines = ClassInstance.objects.filter(
project=p,
cici_via_a__class_instance_b=n,
cici_via_a__relation__relation_name='expresses_in').all()
skeletons = ClassInstance.objects.filter(
project=p,
cici_via_a__relation__relation_name='model_of',
class_column__class_name='skeleton',
cici_via_a__class_instance_b=n)
outgoing = n.all_neurons_downstream(project_id, skeletons)
incoming = n.all_neurons_upstream(project_id, skeletons)
outgoing = [x for x in outgoing if not x['name'].startswith('orphaned ')]
incoming = [x for x in incoming if not x['name'].startswith('orphaned ')]
return my_render_to_response(request,
'vncbrowser/view.html',
{'neuron': n,
'neuron_class': findBrackets( n.name ),
'lines': lines,
'skeletons': skeletons,
'project_id': project_id,
'catmaid_url': settings.CATMAID_URL,
'user': logged_in_user,
'cell_body_choices': CELL_BODY_CHOICES,
'incoming': incoming,
'outgoing': outgoing,
'wiki_base_url': p.wiki_base_url } )
