def response(returndata):
credInfo = DQXDbTools.ParseCredentialInfo(returndata)
databaseName = DQXDbTools.ToSafeIdentifier(returndata['database'])
authorization.VerifyIsDataSetManager(credInfo, databaseName)
encodedstr = returndata['content']
content = DQXbase64.b64decode_var2(encodedstr)
baseFolder = config.SOURCEDATADIR + '/datasets'
genomeFolder = os.path.join(baseFolder, databaseName, 'refgenome')
settingsFile = os.path.join(genomeFolder, 'chromosomes')
try:
if not os.path.exists(genomeFolder):
os.makedirs(genomeFolder)
with open(settingsFile, 'w') as fp:
fp.write(content)
except Exception as e:
returndata['Error'] = str(e)
return returndata
def response(returndata):
credInfo = DQXDbTools.ParseCredentialInfo(returndata)
databaseName = DQXDbTools.ToSafeIdentifier(returndata['database'])
authorization.VerifyIsDataSetManager(credInfo, databaseName)
encodedstr = returndata['content']
content = DQXbase64.b64decode_var2(encodedstr)
baseFolder = config.SOURCEDATADIR + '/datasets'
genomeFolder = os.path.join(baseFolder, databaseName, 'refgenome')
settingsFile = os.path.join(genomeFolder, 'settings')
try:
if not os.path.exists(genomeFolder):
os.makedirs(genomeFolder)
with open(settingsFile, 'w') as fp:
fp.write(content)
except Exception as e:
returndata['Error'] = str(e)
return returndata
def response(returndata):
credInfo = DQXDbTools.ParseCredentialInfo(returndata)
sourcetype = DQXDbTools.ToSafeIdentifier(returndata['sourcetype'])
databaseName = DQXDbTools.ToSafeIdentifier(returndata['database'])
workspaceid = DQXDbTools.ToSafeIdentifier(returndata['workspaceid'])
tableid = DQXDbTools.ToSafeIdentifier(returndata['tableid'])
sourceid = DQXDbTools.ToSafeIdentifier(returndata['sourceid'])
contentid = returndata['contentid']
filename = os.path.join(config.BASEDIR, 'temp', 'store_' + contentid)
with open(filename, 'r') as fp:
encodedstr = fp.read()
os.remove(filename)
content = DQXbase64.b64decode_var2(encodedstr)
baseFolder = config.SOURCEDATADIR + '/datasets'
settingsFile = None
if sourcetype == 'dataset':
settingsFile = os.path.join(baseFolder, databaseName, 'settings')
authorization.VerifyIsDataSetManager(credInfo, databaseName)
if sourcetype == 'datatable':
settingsFile = os.path.join(baseFolder, databaseName, 'datatables',
tableid, 'settings')
authorization.VerifyIsDataSetManager(credInfo, databaseName)
if sourcetype == 'workspace':
settingsFile = os.path.join(baseFolder, databaseName, 'workspaces',
workspaceid, 'settings')
credInfo.VerifyCanDo(
DQXDbTools.DbOperationWrite(databaseName, 'workspaces'))
if sourcetype == 'customdata':
settingsFile = os.path.join(baseFolder, databaseName, 'workspaces',
workspaceid, 'customdata', tableid,
sourceid, 'settings')
credInfo.VerifyCanDo(
DQXDbTools.DbOperationWrite(databaseName, 'workspaces'))
if settingsFile is None:
returndata['Error'] = 'Invalid file source type'
return returndata
try:
with open(settingsFile, 'w') as fp:
fp.write(content)
except Exception as e:
returndata['Error'] = str(e)
return returndata
def response(returndata):
credInfo = DQXDbTools.CredentialInformation(returndata)
sourcetype = DQXDbTools.ToSafeIdentifier(returndata["sourcetype"])
databaseName = DQXDbTools.ToSafeIdentifier(returndata["database"])
workspaceid = DQXDbTools.ToSafeIdentifier(returndata["workspaceid"])
tableid = DQXDbTools.ToSafeIdentifier(returndata["tableid"])
sourceid = DQXDbTools.ToSafeIdentifier(returndata["sourceid"])
contentid = returndata["contentid"]
filename = os.path.join(config.BASEDIR, "temp", "store_" + contentid)
with open(filename, "r") as fp:
encodedstr = fp.read()
os.remove(filename)
content = DQXbase64.b64decode_var2(encodedstr)
baseFolder = config.SOURCEDATADIR + "/datasets"
settingsFile = None
if sourcetype == "dataset":
settingsFile = os.path.join(baseFolder, databaseName, "settings")
authorization.VerifyIsDataSetManager(credInfo, databaseName)
if sourcetype == "datatable":
settingsFile = os.path.join(baseFolder, databaseName, "datatables", tableid, "settings")
authorization.VerifyIsDataSetManager(credInfo, databaseName)
if sourcetype == "2D_datatable":
settingsFile = os.path.join(baseFolder, databaseName, "2D_datatables", tableid, "settings")
authorization.VerifyIsDataSetManager(credInfo, databaseName)
if sourcetype == "workspace":
settingsFile = os.path.join(baseFolder, databaseName, "workspaces", workspaceid, "settings")
credInfo.VerifyCanDo(DQXDbTools.DbOperationWrite(databaseName, "workspaces"))
if sourcetype == "customdata":
settingsFile = os.path.join(
baseFolder, databaseName, "workspaces", workspaceid, "customdata", tableid, sourceid, "settings"
)
credInfo.VerifyCanDo(DQXDbTools.DbOperationWrite(databaseName, "workspaces"))
if settingsFile is None:
returndata["Error"] = "Invalid file source type"
return returndata
try:
with open(settingsFile, "w") as fp:
fp.write(content)
except Exception as e:
returndata["Error"] = str(e)
return returndata
def response(returndata):
credInfo = DQXDbTools.ParseCredentialInfo(returndata)
sourcetype = DQXDbTools.ToSafeIdentifier(returndata['sourcetype'])
databaseName = DQXDbTools.ToSafeIdentifier(returndata['database'])
workspaceid = DQXDbTools.ToSafeIdentifier(returndata['workspaceid'])
tableid = DQXDbTools.ToSafeIdentifier(returndata['tableid'])
sourceid = DQXDbTools.ToSafeIdentifier(returndata['sourceid'])
contentid = returndata['contentid']
filename = os.path.join(config.BASEDIR, 'temp', 'store_'+contentid)
with open(filename, 'r') as fp:
encodedstr = fp.read()
os.remove(filename)
content = DQXbase64.b64decode_var2(encodedstr)
baseFolder = config.SOURCEDATADIR + '/datasets'
settingsFile = None
if sourcetype == 'dataset':
settingsFile = os.path.join(baseFolder, databaseName, 'settings')
authorization.VerifyIsDataSetManager(credInfo, databaseName)
if sourcetype == 'datatable':
settingsFile = os.path.join(baseFolder, databaseName, 'datatables', tableid, 'settings')
authorization.VerifyIsDataSetManager(credInfo, databaseName)
if sourcetype == 'workspace':
settingsFile = os.path.join(baseFolder, databaseName, 'workspaces', workspaceid, 'settings')
credInfo.VerifyCanDo(DQXDbTools.DbOperationWrite(databaseName, 'workspaces'))
if sourcetype == 'customdata':
settingsFile = os.path.join(baseFolder, databaseName, 'workspaces', workspaceid, 'customdata', tableid, sourceid, 'settings')
credInfo.VerifyCanDo(DQXDbTools.DbOperationWrite(databaseName, 'workspaces'))
if settingsFile is None:
returndata['Error'] = 'Invalid file source type'
return returndata
try:
with open(settingsFile, 'w') as fp:
fp.write(content)
except Exception as e:
returndata['Error'] = str(e)
return returndata
def Decode(self, str, noBase64=False):
if not noBase64:
str = DQXbase64.b64decode_var2(str)
self.query = simplejson.loads(str)
pass
def Decode(self, encodedstr):
decodedstr = DQXbase64.b64decode_var2(encodedstr)
self.query = simplejson.loads(decodedstr)
pass
def Decode(self, str, noBase64=False):
if not noBase64:
str = DQXbase64.b64decode_var2(str)
self.query = simplejson.loads(str)
pass
