Esempio n. 1
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 def __init__(self, id, resname, segid):
     """Initialize the class."""
     self.level = "R"
     self.disordered = 0
     self.resname = resname
     self.segid = segid
     Entity.__init__(self, id)
 def __init__(self,id):
     Entity.__init__(self, id)
     #Store the SEQRES protein. Whole its SEQRES will be record it
     self._SeqRes={}
     self._iSeq = -1
     #Store chain and its residue number. Because this value is very used. Thus, this dictionary help to get it
     self._ChainNumRes = {}
Esempio n. 3
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 def __init__(self, id, resname, segid):
     """Initialize the class."""
     self.level = "R"
     self.disordered = 0
     self.resname = resname
     self.segid = segid
     Entity.__init__(self, id)
Esempio n. 4
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    def __init__(self, id):
        self.level="I"
        self.id=id
        self.neighbors = {}
        self.uniq_pairs = []

        Entity.__init__(self, id)
Esempio n. 5
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    def __init__(self, id, serial_num=None):
        """Arguments:
        o id - int
        o serial_num - int
        """
        self.level = "M"
        if serial_num is None:
            self.serial_num = id
        else:
            self.serial_num = serial_num

        Entity.__init__(self, id)
Esempio n. 6
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    def __init__(self, id, serial_num=None):
        """
        Arguments:
        o id - int
        o serial_num - int
        """
        self.level = "M"
        if serial_num is None:
            self.serial_num = id
        else:
            self.serial_num = serial_num

        Entity.__init__(self, id)
Esempio n. 7
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    def __init__(self, id, serial_num=None):
        """Initialize.

        Arguments:
         - id - int
         - serial_num - int

        """
        self.level = "M"
        if serial_num is None:
            self.serial_num = id
        else:
            self.serial_num = serial_num

        Entity.__init__(self, id)
Esempio n. 8
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    def __init__(self, id, serial_num=None):
        """Initialize.

        Arguments:
         - id - int
         - serial_num - int

        """
        self.level = "M"
        if serial_num is None:
            self.serial_num = id
        else:
            self.serial_num = serial_num

        Entity.__init__(self, id)
 def __init__(self, id):
     self.level = "S"
     Entity.__init__(self, id)
Esempio n. 10
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 def __init__(self, id):
     """Initialize the class."""
     self.level = "S"
     Entity.__init__(self, id)
Esempio n. 11
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 def __init__(self, id, resname, segid):
     self.level="R"
     self.disordered=0
     self.resname=resname
     self.segid=segid
     Entity.__init__(self, id)
 def __init__(self,id):
     Entity.__init__(self, id)
     self._SeqRes = None
     self._SSBonds = None
     self._structureErrors = None
Esempio n. 13
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 def __init__(self, id):
     """Initialize the class."""
     self.level = "S"
     Entity.__init__(self, id)
Esempio n. 14
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 def __init__(self, id):
     """Initialize the class."""
     self.level = "C"
     self.internal_coord = None
     Entity.__init__(self, id)
 def __init__(self,id):
     Entity.__init__(self, id)
     #Store the structure errors.
     self._dicStructureErrors= {}
 def __init__(self,id):
     Entity.__init__(self, id)
     #Store the SSBONDS protein.
     self._SSBonds= {}