Esempi in Python per Consensus.bootstrap_trees

Esempio n. 1

File: test_Consensus.py Progetto: BioGeek/biopython

 def test_bootstrap_trees(self):
     calculator = DistanceCalculator('blosum62')
     constructor = DistanceTreeConstructor(calculator)
     trees = list(Consensus.bootstrap_trees(self.msa, 100, constructor))
     self.assertEqual(len(trees), 100)
     self.assertTrue(isinstance(trees[0], BaseTree.Tree))

Esempio n. 2

File: test_Consensus.py Progetto: sjl421/Example-Codes-and-Learning-Tools

 def test_bootstrap_trees(self):
     calculator = DistanceCalculator('blosum62')
     constructor = DistanceTreeConstructor(calculator)
     trees = list(Consensus.bootstrap_trees(self.msa, 100, constructor))
     self.assertEqual(len(trees), 100)
     self.assertTrue(isinstance(trees[0], BaseTree.Tree))