def test_genbank_to_fasta(self): """Conversion of GenBank to FASTA.""" filename = "GenBank/NC_005816.gb" old = SeqIO.read(filename, "gb") with open(filename) as handle: new = SeqIO.read(TogoWS.convert(handle, "genbank", "fasta"), "fasta") self.assertEqual(str(old.seq), str(new.seq))
def test_genbank_to_fasta(self): """Conversion of GenBank to FASTA.""" filename = "GenBank/NC_005816.gb" old = SeqIO.read(filename, "gb") new = SeqIO.read(TogoWS.convert(open(filename), "genbank", "fasta"), "fasta") self.assertEqual(str(old.seq), str(new.seq))
def test_genbank_to_embl(self): """Conversion of GenBank to EMBL.""" filename = "GenBank/NC_005816.gb" old = SeqIO.read(filename, "gb") with open(filename) as handle: new = SeqIO.read(TogoWS.convert(handle, "genbank", "embl"), "embl") self.assertEqual(str(old.seq), str(new.seq))
def test_genbank_to_embl(self): """Conversion of GenBank to EMBL.""" filename = "GenBank/NC_005816.gb" old = SeqIO.read(filename, "gb") new = SeqIO.read(TogoWS.convert(open(filename), "genbank", "embl"), "embl") self.assertEqual(str(old.seq), str(new.seq))