def test_genbank_to_fasta(self):
"""Conversion of GenBank to FASTA."""
filename = "GenBank/NC_005816.gb"
old = SeqIO.read(filename, "gb")
with open(filename) as handle:
new = SeqIO.read(TogoWS.convert(handle, "genbank", "fasta"), "fasta")
self.assertEqual(str(old.seq), str(new.seq))
def test_genbank_to_fasta(self):
"""Conversion of GenBank to FASTA."""
filename = "GenBank/NC_005816.gb"
old = SeqIO.read(filename, "gb")
new = SeqIO.read(TogoWS.convert(open(filename), "genbank", "fasta"),
"fasta")
self.assertEqual(str(old.seq), str(new.seq))
def test_genbank_to_embl(self):
"""Conversion of GenBank to EMBL."""
filename = "GenBank/NC_005816.gb"
old = SeqIO.read(filename, "gb")
with open(filename) as handle:
new = SeqIO.read(TogoWS.convert(handle, "genbank", "embl"), "embl")
self.assertEqual(str(old.seq), str(new.seq))
def test_genbank_to_embl(self):
"""Conversion of GenBank to EMBL."""
filename = "GenBank/NC_005816.gb"
old = SeqIO.read(filename, "gb")
new = SeqIO.read(TogoWS.convert(open(filename), "genbank", "embl"), "embl")
self.assertEqual(str(old.seq), str(new.seq))
