def calculateMatchedGCComposition(infiles, outfile): ''' calculate the GC content for the CpG matched data Should be the same as the CpG content of the foreground set ''' PipelineTFM.calculateSequenceComposition(infiles[0], infiles[1], outfile)
def calculateGCContent(infiles, outfile): ''' calculate the GC content across foreground and background sets ''' PipelineTFM.calculateSequenceComposition(infiles[0], infiles[1], outfile, PARAMS["genesets_header"])
def calculateMatchedGCComposition(infiles, outfile): ''' calculate the GC content for the CpG matched data Should be the same as the CpG content of the foreground set ''' PipelineTFM.calculateSequenceComposition(infiles[0], infiles[1], outfile)
def calculateGCContent(infiles, outfile): ''' calculate the GC content across foreground and background sets ''' PipelineTFM.calculateSequenceComposition(infiles[0], infiles[1], outfile, PARAMS["genesets_header"])