def calculateMatchedGCComposition(infiles, outfile):
'''
calculate the GC content for the CpG matched data
Should be the same as the CpG content of the foreground
set
'''
PipelineTFM.calculateSequenceComposition(infiles[0], infiles[1],
outfile)
def calculateGCContent(infiles, outfile):
'''
calculate the GC content across foreground and background sets
'''
PipelineTFM.calculateSequenceComposition(infiles[0],
infiles[1],
outfile,
PARAMS["genesets_header"])
def calculateMatchedGCComposition(infiles, outfile):
'''
calculate the GC content for the CpG matched data
Should be the same as the CpG content of the foreground
set
'''
PipelineTFM.calculateSequenceComposition(infiles[0],
infiles[1],
outfile)
def calculateGCContent(infiles, outfile):
'''
calculate the GC content across foreground and background sets
'''
PipelineTFM.calculateSequenceComposition(infiles[0], infiles[1], outfile,
PARAMS["genesets_header"])
