def from_dir(cls, ID, path,
parser='name',
position_mapper=None, pattern='*.fcs', recursive=False,
readdata_kwargs={}, readmeta_kwargs={}, ID_kwargs={}, **kwargs):
"""
Create a Collection of measurements from data files contained in a directory.
Parameters
----------
{_bases_ID}
datadir : str
Path of directory containing the data files.
pattern : str
Only files matching the pattern will be used to create measurements.
recursive : bool
Recursively look for files matching pattern in subdirectories.
{_bases_filename_parser}
{_bases_position_mapper}
{_bases_ID_kwargs}
kwargs : dict
Additional key word arguments to be passed to constructor.
"""
datafiles = get_files(path, pattern, recursive)
return cls.from_files(ID, datafiles, parser=parser, position_mapper=position_mapper,
readdata_kwargs=readdata_kwargs, readmeta_kwargs=readmeta_kwargs,
ID_kwargs=ID_kwargs, **kwargs)
def from_dir(cls,
ID,
datadir,
parser,
pattern='*.fcs',
recursive=False,
readdata_kwargs={},
readmeta_kwargs={},
**ID_kwargs):
"""
Create a Collection of measurements from data files contained in a directory.
Parameters
----------
ID : hashable
Collection ID
datadir : str
Path of directory containing the data files.
pattern : str
Only files matching the pattern will be used to create measurements.
recursive : bool
Recursively look for files matching pattern in subdirectories.
{_bases_filename_parser}
{_bases_ID_kwargs}
"""
datafiles = get_files(datadir, pattern, recursive)
return cls.from_files(ID,
datafiles,
parser,
readdata_kwargs=readdata_kwargs,
readmeta_kwargs=readmeta_kwargs,
**ID_kwargs)
def from_dir(cls, ID, datadir, parser, pattern='*.fcs', recursive=False,
readdata_kwargs={}, readmeta_kwargs={}, **ID_kwargs):
"""
Create a Collection of measurements from data files contained in a directory.
Parameters
----------
ID : hashable
Collection ID
datadir : str
Path of directory containing the data files.
pattern : str
Only files matching the pattern will be used to create measurements.
recursive : bool
Recursively look for files matching pattern in subdirectories.
{_bases_filename_parser}
{_bases_ID_kwargs}
"""
datafiles = get_files(datadir, pattern, recursive)
return cls.from_files(ID, datafiles, parser,
readdata_kwargs=readdata_kwargs, readmeta_kwargs=readmeta_kwargs,
**ID_kwargs)
def from_dir(cls,
ID,
path,
parser='name',
position_mapper=None,
pattern='*.fcs',
recursive=False,
readdata_kwargs={},
readmeta_kwargs={},
ID_kwargs={},
**kwargs):
"""
Create a Collection of measurements from data files contained in a directory.
Parameters
----------
{_bases_ID}
datadir : str
Path of directory containing the data files.
pattern : str
Only files matching the pattern will be used to create measurements.
recursive : bool
Recursively look for files matching pattern in subdirectories.
{_bases_filename_parser}
{_bases_position_mapper}
{_bases_ID_kwargs}
kwargs : dict
Additional key word arguments to be passed to constructor.
"""
datafiles = get_files(path, pattern, recursive)
return cls.from_files(ID,
datafiles,
parser=parser,
position_mapper=position_mapper,
readdata_kwargs=readdata_kwargs,
readmeta_kwargs=readmeta_kwargs,
ID_kwargs=ID_kwargs,
**kwargs)