def encode(**kwargs):
if kwargs['key'] is None and kwargs['key_raw'] is None:
raise Exceptions.NoKeyException()
io = IOManager(**kwargs)
arr = CryptAlghorithm.crypt_class(kwargs['algorithm']).encrypt(
io.input_arr, io.key_arr)
io.push(arr)
def hack(**kwargs):
if kwargs['hack_tries'] is None:
raise Exceptions.HackTriesNumberException()
io = IOManager(**kwargs)
arr = CryptAlghorithm.crypt_class(kwargs['algorithm']).hack(
io.input_arr, kwargs['hack_tries'])
io.push_pack(arr)
def convert(self, _file_in, _file_out=None, max_entries=None):
# if there is not an output file, the output is the input with a new file extension:
if _file_out is None:
directory = os.path.dirname(_file_in)
file_root = os.path.basename(_file_in)
_file_out = directory + os.path.splitext(
file_root)[0] + '_larcv.root'
# print _file_out
self._input_file = _file_in
self._output_file = _file_out
if not self._initialized:
self.initialize_geometry()
self._initialized = True
# Create the instances of IO managers:
self._next_io = IOManager()
self._next_io.set_file(self._input_file)
# larcv io:
self._larcv_io = larcv.IOManager(larcv.IOManager.kWRITE)
self._larcv_io.set_out_file(self._output_file)
self._larcv_io.initialize()
self.event_loop(max_entries=max_entries)
def __init__(self, parameters):
r"""Create a new simulation loop instance for a simulation
using the semiclassical Hagedorn wavepacket based propagation
method.
:param parameters: The simulation parameters.
:type parameters: A :py:class:`ParameterProvider` instance.
"""
# Keep a reference to the simulation parameters
self.parameters = parameters
# The time propagator instance driving the simulation.
self.propagator = None
# A `IOManager` instance for saving simulation results.
self.IOManager = None
# The time manager
self._tm = TimeManager(self.parameters)
# Set up serialization of simulation data
self.IOManager = IOManager()
self.IOManager.create_file()
# Save the simulation parameters
self.IOManager.add_parameters()
self.IOManager.save_parameters(parameters)
def __init__(self, parameters):
"""Create a new simulation loop instance for a simulation
using the Fourier propagation method.
:param parameters: The simulation parameters.
:type parameters: A :py:class:`ParameterProvider` instance.
"""
# Keep a reference to the simulation parameters
self.parameters = parameters
# The time propagator instance driving the simulation.
self.propagator = None
# An `IOManager` instance for saving simulation results.
self.IOManager = None
# Which data do we want to save
self._tm = self.parameters.get_timemanager()
# Set up serialization of simulation data
self.IOManager = IOManager()
self.IOManager.create_file()
self.IOManager.create_block()
# Save the simulation parameters
self.IOManager.add_parameters()
self.IOManager.save_parameters(parameters)
def SetBinning(self, varexp, *args):
if len(args) == 3:
self._binning[varexp] = IOManager._convertBinning(args)
elif len(args) == 1 and isinstance(args[0], list):
self._binning[varexp] = args[0]
else:
logger.error("Invalid binning format '{}' for varexp '{}'!".format(
args, varexp))
def raw_src_mode(caller: EncryptorApp):
kwargs = {
'key_raw': str(caller.var1_keyraw.displayText()),
'img': str(caller.var1_img.displayText()),
'useimg': False,
'key': None,
'crypt': 'encode',
'src': os.path.realpath(__file__),
'dest': caller.var1_dest.displayText()
}
raw_src = str(caller.var1_textArea.toPlainText())
if kwargs['img'] != '':
if not os.path.isfile(kwargs['img']):
raise Exceptions.BadImageFileException()
kwargs['useimg'] = True
arr = CryptAlghorithm.crypt_class(caller.cryptType.currentIndex()).encrypt(
bytearray(raw_src, sys.stdin.encoding),
bytearray(kwargs['key_raw'], sys.stdin.encoding))
io = IOManager(**kwargs)
io.push(arr)
def _parse_fat16_structure(self, io_manager: IOManager):
self.BS_DrvNum = io_manager.read_bytes_and_convert_to_int(1)
self.BS_Reserved1 = io_manager.read_bytes_and_convert_to_int(1)
self.BS_bootSig = io_manager.read_bytes_and_convert_to_int(1)
self.BS_VolID = io_manager.read_bytes_and_convert_to_int(4)
self.BS_VolLab = io_manager.read_bytes_and_convert_to_int(11)
self.BS_FilSysType = io_manager.read_bytes_and_convert_to_int(8)
def Fill(self, *args, **kwargs):
r"""Fill the histogram with entries.
If a path (``str``) to an **infile** is given as the only argument the histogram
if filled using the events in there as specified by the keyword arguments.
Otherwise the standard :func:`ROOT.TH1.Fill` functionality is used.
:param \*args: see below
:param \**kwargs: see below
:Arguments:
Depending on the number of arguments (besides **name**) there are three ways
to initialize a :class:`.Histo1D` object\:
* *one* argument of type ``str``\:
#. **infile** (``str``) -- path to the input :py:mod:`ROOT` file (use
keyword arguments to define which events to select)
* otherwise\:
see :py:mod:`ROOT` documentation of :func:`TH1.Fill` (keyword arguments
will be ignored)
:Keyword Arguments:
* **tree** (``str``) -- name of the input tree
* **varexp** (``str``) -- name of the branch to be plotted on the x-axis
* **cuts** (``str``, ``list``, ``tuple``) -- string or list of strings of
boolean expressions, the latter will default to a logical *AND* of all
items (default: '1')
* **weight** (``str``) -- number or branch name to be applied as a weight
(default: '1')
* **append** (``bool``) -- append entries to the histogram instead of
overwriting it (default: ``False``)
"""
self._varexp = kwargs.get("varexp")
self._cuts = kwargs.get("cuts", [])
self._weight = kwargs.get("weight", "1")
if len(args) == 1 and isinstance(args[0], (str, unicode)):
IOManager.FillHistogram(self, args[0], **kwargs)
if not kwargs.get("append", False):
self._errorband.Reset()
self._errorband.Add(self)
else:
super(Histo1D, self).Fill(*args)
def __init__(self, parameters):
r"""Create a new simulation loop instance for a simulation
using the semiclassical Hagedorn wavepacket based propagation
method.
:param parameters: The simulation parameters.
:type parameters: A :py:class:`ParameterProvider` instance.
"""
# Keep a reference to the simulation parameters
self.parameters = parameters
# The time propagator instance driving the simulation.
self.propagator = None
# A `IOManager` instance for saving simulation results.
self.IOManager = None
# The time manager
self._tm = TimeManager(self.parameters)
# Set up serialization of simulation data
self.IOManager = IOManager()
self.IOManager.create_file(self.parameters)
def __init__(self, parameters):
"""Create a new simulation loop instance for a simulation
using the Fourier propagation method.
:param parameters: The simulation parameters.
:type parameters: A :py:class:`ParameterProvider` instance.
"""
# Keep a reference to the simulation parameters
self.parameters = parameters
# The time propagator instance driving the simulation.
self.propagator = None
# An `IOManager` instance for saving simulation results.
self.IOManager = None
# Which data do we want to save
self._tm = self.parameters.get_timemanager()
# Set up serialization of simulation data
self.IOManager = IOManager()
self.IOManager.create_file(self.parameters)
self.IOManager.create_block()
def __init__(self, parameters):
r"""
Create a new simulation loop instance.
"""
# Keep a reference to the simulation parameters
self.parameters = parameters
self.tm = TimeManager(parameters)
#: The time propagator instance driving the simulation.
self.propagator = None
#: A ``IOManager`` instance for saving simulation results.
self.iom = IOManager()
self.iom.create_file(parameters)
self.gid = self.iom.create_group()
def __init__(self, parameters):
r"""
Create a new simulation loop instance.
"""
# Keep a reference to the simulation parameters
self.parameters = parameters
#: The time propagator instance driving the simulation.
self.propagator = None
#: A ``IOManager`` instance for saving simulation results.
self.IOManager = None
#: The number of time steps we will perform.
self.nsteps = parameters["nsteps"]
# Set up serializing of simulation data
self.IOManager = IOManager()
self.IOManager.create_file(self.parameters)
self.IOManager.create_block()
def CreateHistograms(self):
factories = {}
for histotype, configs in self._configs.items():
self._store[histotype] = {}
for i, (infile, config) in enumerate(configs):
self._store[histotype][i] = {}
config = DissectProperties(
config, [Histo1D, {
"Fill": ["tree", "cuts", "weight"]
}])
tree = config["Fill"]["tree"]
if not (infile, tree) in factories.keys():
factories[infile, tree] = IOManager.Factory(infile, tree)
for varexp, comparator, cutvalue in self._drawcuts:
if not varexp in self._binning:
logger.warning("No binning defined for varexp '{}'. "
"Skipping...".format(varexp))
continue
reducedcuts = list(
filter(
lambda x: x != "".join(
[varexp, comparator, cutvalue]),
self._cuts,
))
self._store[histotype][i][varexp, cutvalue] = Histo1D(
"N1_{}".format(uuid4().hex[:8]), "",
self._binning[varexp], **config["Histo1D"])
factories[infile, tree].Register(
self._store[histotype][i][varexp, cutvalue],
varexp=varexp,
weight=config["Fill"].get("weight", "1"),
cuts=list(config["Fill"].get("cuts", []) +
reducedcuts + self._preselection),
)
for factory in factories.values():
factory.Run()
def _get_file_system(type_of_fat: TypeOfFAT):
io_manager = IOManager(FAT_16_IMAGE_FOR_DEFRAG if type_of_fat == TypeOfFAT.fat16 else FAT_32_IMAGE_FOR_DEFRAG)
return parse_disk_image(io_manager), io_manager
),
xtitle=self._vartitle.get(varexp, varexp),
xunits=self._varunits.get(varexp, None),
inject0=cutmarker,
mkdir=True,
**kwargs)
if __name__ == "__main__":
testsamples = []
for i in range(4):
testsamples.append("../data/testsample_{}.root".format(i))
try:
IOManager.CreateTestSample(testsamples[i], overwrite=False)
except IOError:
pass
cuts = [
"branch_4>1.5",
"branch_1+branch_5<3.75",
"(branch_6>=4.5)&&(abs(branch_7)<=9.5)",
]
binnings = {
"branch_4": [20, 0.0, 10.0], # fixed bin width
"branch_1+branch_5": [20, 0.0, 10.0],
"branch_6":
[[i * 0.25 for i in range(40)] + [10, 11, 12, 13, 14, 15, 17.5, 20]
], # variable bin width
class SimulationLoopHagedorn(SimulationLoop):
r"""
This class acts as the main simulation loop. It owns a propagator that
propagates a set of initial values during a time evolution. All values are
read from the ``Parameters.py`` file.
"""
def __init__(self, parameters):
r"""
Create a new simulation loop instance.
"""
# Keep a reference to the simulation parameters
self.parameters = parameters
#: The time propagator instance driving the simulation.
self.propagator = None
#: A ``IOManager`` instance for saving simulation results.
self.IOManager = None
#: The number of time steps we will perform.
self.nsteps = parameters["nsteps"]
# Set up serializing of simulation data
self.IOManager = IOManager()
self.IOManager.create_file(self.parameters)
self.IOManager.create_block()
def prepare_simulation(self):
r"""
Set up a Hagedorn propagator for the simulation loop. Set the
potential and initial values according to the configuration.
:raise ValueError: For invalid or missing input data.
"""
potential = PF().create_potential(self.parameters)
N = potential.get_number_components()
# Check for enough initial values
if self.parameters["leading_component"] > N:
raise ValueError("Leading component index out of range.")
if len(self.parameters["parameters"]) < N:
raise ValueError("Too few initial states given. Parameters are missing.")
if len(self.parameters["coefficients"]) < N:
raise ValueError("Too few initial states given. Coefficients are missing.")
# Create a suitable wave packet
packet = HagedornWavepacket(self.parameters)
# See if we have a list of parameter tuples or just a single 5-tuple
# This is for compatibility with the inhomogeneous case.
try:
# We have a list of parameter tuples, take the one given by the leading component
len(self.parameters["parameters"][0])
parameters = self.parameters["parameters"][self.parameters["leading_component"]]
except TypeError:
# We have just a single 5-tuple of parameters, take it.
parameters = self.parameters["parameters"]
# Set the Hagedorn parameters
packet.set_parameters(parameters)
packet.set_quadrature(None)
# Set the initial values
for component, data in enumerate(self.parameters["coefficients"]):
for index, value in data:
packet.set_coefficient(component, index, value)
# Project the initial values to the canonical basis
packet.project_to_canonical(potential)
# Finally create and initialize the propagator instace
self.propagator = HagedornPropagator(potential, packet, self.parameters["leading_component"], self.parameters)
# Which data do we want to save
tm = self.parameters.get_timemanager()
slots = tm.compute_number_saves()
self.IOManager.add_grid(self.parameters, blockid="global")
self.IOManager.add_wavepacket(self.parameters, timeslots=slots)
# Write some initial values to disk
nodes = self.parameters["f"] * sp.pi * sp.arange(-1, 1, 2.0 / self.parameters["ngn"], dtype=np.complexfloating)
self.IOManager.save_grid(nodes, blockid="global")
self.IOManager.save_wavepacket_parameters(self.propagator.get_wavepackets().get_parameters(), timestep=0)
self.IOManager.save_wavepacket_coefficients(self.propagator.get_wavepackets().get_coefficients(), timestep=0)
def run_simulation(self):
r"""
Run the simulation loop for a number of time steps. The number of steps is calculated in the ``initialize`` function.
"""
tm = self.parameters.get_timemanager()
# Run the simulation for a given number of timesteps
for i in xrange(1, self.nsteps + 1):
print(" doing timestep " + str(i))
self.propagator.propagate()
# Save some simulation data
if tm.must_save(i):
self.IOManager.save_wavepacket_parameters(
self.propagator.get_wavepackets().get_parameters(), timestep=i
)
self.IOManager.save_wavepacket_coefficients(
self.propagator.get_wavepackets().get_coefficients(), timestep=i
)
def end_simulation(self):
r"""
Do the necessary cleanup after a simulation. For example request the
IOManager to write the data and close the output files.
"""
self.IOManager.finalize()
def test_read_some_bytes_with_incorrect_value(self):
io_manager = IOManager('test_io_manager')
self.check_error(io_manager.read_some_bytes, ValueError, True, 0)
self.check_error(io_manager.read_some_bytes, ValueError, True, -10)
class SimulationLoopHagedornInhomogeneous(SimulationLoop):
r"""This class acts as the main simulation loop. It owns a propagator that
propagates a set of initial values during a time evolution.
"""
def __init__(self, parameters):
r"""Create a new simulation loop instance for a simulation
using the semiclassical Hagedorn wavepacket based propagation
method.
:param parameters: The simulation parameters.
:type parameters: A :py:class:`ParameterProvider` instance.
"""
# Keep a reference to the simulation parameters
self.parameters = parameters
# The time propagator instance driving the simulation.
self.propagator = None
# A `IOManager` instance for saving simulation results.
self.IOManager = None
# The time manager
self._tm = TimeManager(self.parameters)
# Set up serialization of simulation data
self.IOManager = IOManager()
self.IOManager.create_file()
# Save the simulation parameters
self.IOManager.add_parameters()
self.IOManager.save_parameters(parameters)
def prepare_simulation(self):
r"""Set up a Hagedorn propagator for the simulation loop. Set the
potential and initial values according to the configuration.
:raise: :py:class:`ValueError` For invalid or missing input data.
"""
# The potential instance
potential = BlockFactory().create_potential(self.parameters)
# Project the initial values to the canonical basis
BT = BasisTransformationHAWP(potential)
# Finally create and initialize the propagator instance
# TODO: Attach the "leading_component to the hawp as codata
self.propagator = HagedornPropagatorInhomogeneous(self.parameters, potential)
# Create suitable wavepackets
for packet_descr in self.parameters["initvals"]:
packet = BlockFactory().create_wavepacket(packet_descr)
# Transform to canonical basis
BT.set_matrix_builder(packet.get_innerproduct())
BT.transform_to_canonical(packet)
# And hand over
self.propagator.add_wavepacket((packet,))
# Add storage for each packet
npackets = len(self.parameters["initvals"])
slots = self._tm.compute_number_saves()
key = ("q","p","Q","P","S","adQ")
for i in xrange(npackets):
bid = self.IOManager.create_block()
self.IOManager.add_inhomogwavepacket(self.parameters, timeslots=slots, blockid=bid, key=key)
# Write some initial values to disk
for packet in self.propagator.get_wavepackets():
self.IOManager.save_inhomogwavepacket_description(packet.get_description())
# Pi
self.IOManager.save_inhomogwavepacket_parameters(packet.get_parameters(key=key), timestep=0, key=key)
# Basis shapes
for shape in packet.get_basis_shapes():
self.IOManager.save_inhomogwavepacket_basisshapes(shape)
# Coefficients
self.IOManager.save_inhomogwavepacket_coefficients(packet.get_coefficients(), packet.get_basis_shapes(), timestep=0)
def run_simulation(self):
r"""Run the simulation loop for a number of time steps.
"""
# The number of time steps we will perform.
nsteps = self._tm.compute_number_timesteps()
# Which parameter data to save.
key = ("q","p","Q","P","S","adQ")
# Run the prepropagate step
self.propagator.pre_propagate()
# Note: We do not save any data here
# Run the simulation for a given number of timesteps
for i in xrange(1, nsteps+1):
print(" doing timestep "+str(i))
self.propagator.propagate()
# Save some simulation data
if self._tm.must_save(i):
# Run the postpropagate step
self.propagator.post_propagate()
# TODO: Generalize for arbitrary number of wavepackets
packets = self.propagator.get_wavepackets()
assert len(packets) == 1
for packet in packets:
# Pi
self.IOManager.save_inhomogwavepacket_parameters(packet.get_parameters(key=key), timestep=i, key=key)
# Basis shapes (in case they changed!)
for shape in packet.get_basis_shapes():
self.IOManager.save_inhomogwavepacket_basisshapes(shape)
# Coefficients
self.IOManager.save_inhomogwavepacket_coefficients(packet.get_coefficients(), packet.get_basis_shapes(), timestep=i)
# Run the prepropagate step
self.propagator.pre_propagate()
# Run the postpropagate step
self.propagator.post_propagate()
# Note: We do not save any data here
def end_simulation(self):
r"""Do the necessary cleanup after a simulation. For example request the
:py:class:`IOManager` to write the data and close the output files.
"""
self.IOManager.finalize()
class Converter(object):
def __init__(self):
super(Converter, self).__init__()
# Pointers to the files:
self._input_file = None
self._output_file = None
# IO Instances:
self._larcv_io = None
self._next_io = None
self._initialized = False
self._pc = ParticleConverter()
def convert(self, _file_in, _file_out=None, max_entries=None):
# if there is not an output file, the output is the input with a new file extension:
if _file_out is None:
directory = os.path.dirname(_file_in)
file_root = os.path.basename(_file_in)
_file_out = directory + os.path.splitext(
file_root)[0] + '_larcv.root'
# print _file_out
self._input_file = _file_in
self._output_file = _file_out
if not self._initialized:
self.initialize_geometry()
self._initialized = True
# Create the instances of IO managers:
self._next_io = IOManager()
self._next_io.set_file(self._input_file)
# larcv io:
self._larcv_io = larcv.IOManager(larcv.IOManager.kWRITE)
self._larcv_io.set_out_file(self._output_file)
self._larcv_io.initialize()
self.event_loop(max_entries=max_entries)
def initialize_geometry(self):
'''Set up and cache the geometry information
Creates meta objects for larcv and reads the database for h5.
'''
# Read in the database to get the pmt and sipm locations:
self._pmt_locations = load_db.DataPMT()
self._sipm_locations = load_db.DataSiPM()
self._det_geo = load_db.DetectorGeo()
min_x = numpy.min(self._sipm_locations.X)
max_x = numpy.max(self._sipm_locations.X)
min_y = numpy.min(self._sipm_locations.Y)
max_y = numpy.max(self._sipm_locations.Y)
min_z = self._det_geo.ZMIN
max_z = self._det_geo.ZMAX
n_x = int(max_x - min_x)
n_y = int(max_y - min_y)
n_z = int(max_z - min_z)
# Create just one meta to use for NEXT-New
self._mc_meta = larcv.Voxel3DMeta()
self._mc_meta.set(min_x, min_y, min_z, max_x, max_y, max_z, n_x, n_y,
n_z)
print '_sipm_locations.X', _sipm_locations.X
print '_sipm_locations.Y', _sipm_locations.Y
n_x = n_x / 10
n_y = n_y / 10
self._pmaps_meta = larcv.Voxel3DMeta()
self._pmaps_meta.set(min_x, min_y, min_z, max_x, max_y, max_z, n_x,
n_y, n_z)
return
def convert_mc_information(self):
if self._larcv_io is None:
raise Exception("No larcv IO manager found.")
if self._next_io is None:
raise Exception("No next IO manager found.")
# Convert particle object
hits = self._next_io.mc().hits(self._event)
particles = self._next_io.mc().particles(self._event)
larcv_particle_set = self._larcv_io.get_data("particle", "mcpart")
larcv_voxel3d = self._larcv_io.get_data("sparse3d", "mcpart")
larcv_cluster3d = self._larcv_io.get_data("cluster3d", "mcpart")
larcv_particle_set.clear()
larcv_voxel3d.clear()
larcv_cluster3d.clear()
larcv_voxel3d.meta(self._mc_meta)
larcv_cluster3d.meta(self._mc_meta)
particle_index_mapping = dict()
i = 0
for particle in particles:
larcv_particle = larcv.Particle()
larcv_particle.id(i)
larcv_particle.track_id(int(particle['particle_indx']))
particle_index_mapping[particle['particle_indx']] = i
larcv_particle.parent_track_id(int(particle['mother_indx']))
larcv_particle.pdg_code(
self._pc.get_pdg(particles[i]['particle_name']))
larcv_particle.position(particle['initial_vertex'][0],
particle['initial_vertex'][1],
particle['initial_vertex'][2],
particle['initial_vertex'][3])
larcv_particle.end_position(particle['final_vertex'][0],
particle['final_vertex'][1],
particle['final_vertex'][2],
particle['final_vertex'][3])
# Momentum:
larcv_particle.momentum(particle['momentum'][0],
particle['momentum'][1],
particle['momentum'][2])
#kinetic energy:
larcv_particle.energy_init(particle['kin_energy'])
larcv_particle.creation_process(particle['creator_proc'])
larcv_particle_set.append(larcv_particle)
i += 1
# print particle
# Create a set of clusters to match the length of the particles:
larcv_cluster3d.resize(i + 1)
for hit in hits:
xyz = hit['hit_position']
larcv_voxel3d.emplace(xyz[0], xyz[1], xyz[2], hit['hit_energy'])
# Get the particle index of this hit:
if hit['particle_indx'] in particle_index_mapping.keys():
idx = particle_index_mapping[int(hit['particle_indx'])]
else:
idx = i
larcv_voxel_index = self._mc_meta.id(xyz[0], xyz[1], xyz[2])
voxel = larcv.Voxel(larcv_voxel_index, hit['hit_energy'])
larcv_cluster3d.writeable_voxel_set(idx).add(voxel)
return True
def convert_pmaps(self):
if self._larcv_io is None:
raise Exception("No larcv IO manager found.")
if self._next_io is None:
raise Exception("No next IO manager found.")
pmaps = self._next_io.pmaps()
larcv_voxel = self._larcv_io.get_data("sparse3d", "pmaps")
larcv_voxel.clear()
larcv_voxel.meta(self._pmaps_meta)
larcv_meta = self._larcv_io.get_data("meta", "pmaps")
# Get the sipms location
# _sipm_locations = load_db.DataSiPM()
# Use S1 to get t0
if pmaps.s1() is None:
return False
if pmaps.s2Pmt() is None:
return False
if pmaps.s2Si() is None:
return False
s1_peak_time_idx = numpy.argmax(numpy.asarray(pmaps.s1()['ene']))
t0 = pmaps.s1()['time'][s1_peak_time_idx]
t0 *= 1e-3
# Covert the S2 df to a dictionary
s2_dict = {}
for i in xrange(0, len(pmaps.s2())):
current_peak = s2_dict.setdefault(pmaps.s2()['peak'][i], ([], []))
current_peak[0].append(pmaps.s2()['time'][i])
current_peak[1].append(pmaps.s2()['ene'][i])
# print 's2_dict', s2_dict
# Covert the S2Si df to a dictionary
# s2si_dict is a dictionary {peak number, sipms dictionary}
# 'sipms dictionary' is a dictionary {sipms number, time and energy arrays}
s2si_dict = {}
for i in xrange(0, len(pmaps.s2Si())):
peak_number = pmaps.s2Si()['peak'][i]
sipm_number = pmaps.s2Si()['nsipm'][i]
current_peak = s2si_dict.setdefault(peak_number, {})
current_sipms = current_peak.setdefault(sipm_number, ([], []))
# Get the time from previous S2 dictionary, and save time and energy
e = pmaps.s2Si()['ene'][i]
t = s2_dict[peak_number][0][len(current_sipms[0])]
current_sipms[0].append(t)
current_sipms[1].append(e)
x = self._sipm_locations.X[sipm_number]
y = self._sipm_locations.Y[sipm_number]
z = 1e-3 * t - t0
if e > 0.00001:
larcv_voxel.emplace(x, y, z, e)
# Covert the S2PMT df to a dictionary
# s2pmt_dict is a dictionary {peak number, pmt dictionary}
# 'pmt dictionary' is a dictionary {pmt number, time and energy arrays}
s2pmt_dict = {}
times = ROOT.std.vector('double')()
energies = ROOT.std.vector('double')()
for i in xrange(0, len(pmaps.s2Pmt())):
peak_number = pmaps.s2Pmt()['peak'][i]
pmt_number = pmaps.s2Pmt()['npmt'][i]
current_peak = s2pmt_dict.setdefault(peak_number, {})
current_pmts = current_peak.setdefault(pmt_number, ([], []))
# Get the time from previous S2 dictionary, and save time and energy
e = pmaps.s2Pmt()['ene'][i]
t = s2_dict[peak_number][0][len(current_pmts[0])]
current_pmts[0].append(t)
current_pmts[1].append(e)
times.push_back(t)
energies.push_back(e)
larcv_meta.store("s2pmt_time", times)
larcv_meta.store("s2pmt_energy", energies)
return True
def event_loop(self, max_entries=None):
if not self._initialized:
raise Exception("Need to initialize before event loop.")
entry_count = 0
for entry in self._next_io.entries():
if entry_count % 1 == 0:
sys.stdout.write("Processed entry {}.\n".format(entry_count))
# Read the entry in the next IO:
self._next_io.go_to_entry(entry)
self._entry = entry
self._event = self._next_io.event()
self._run = self._next_io.run()
if self._run < 0:
self._run = 0
##########################
# Do the conversions here.
##########################
_ok = self.convert_mc_information()
_ok = self.convert_pmaps() and _ok
# print _ok
if _ok:
self._larcv_io.set_id(int(self._run), 0, int(self._event))
self._larcv_io.save_entry()
entry_count += 1
if max_entries is not None and entry > max_entries:
break
self._larcv_io.finalize()
sys.stdout.write(
"Total number of entries converted: {}\n".format(entry_count))
class TestIOManager(unittest.TestCase):
def setUp(self):
self.manager = IOManager()
def tearDown(self):
if self.manager.is_running():
self.manager.stop()
def test_starts_and_stops(self):
pass
def test_is_running(self):
self.assertTrue(self.manager.is_running())
self.manager.stop()
self.assertFalse(self.manager.is_running())
def test_calls_callbacks(self):
pipe = PipeWrapper()
event = threading.Event()
def callback(flag):
if flag == select.POLLIN:
text = pipe.reader.readline()
if text == "super beans\n":
event.set()
else:
self.assertEqual(flag, select.POLLHUP)
self.manager.add_file(pipe.reader, lambda flag: callback(flag))
self.assertFalse(event.is_set())
pipe.send("super beans\n")
event.wait(1)
self.assertTrue(event.is_set())
def test_removes_callbacks(self):
pipe = PipeWrapper()
event = threading.Event()
def callback(flag):
if flag == select.POLLIN:
text = pipe.reader.readline()
if text == "super beans\n":
event.set()
else:
self.assertEqual(flag, select.POLLHUP)
self.manager.add_file(pipe.reader, lambda flag: callback(flag))
self.assertFalse(event.is_set())
pipe.send("super beans\n")
event.wait(1)
self.assertTrue(event.is_set())
event.clear()
self.manager.remove_file(pipe.reader)
self.assertFalse(event.is_set())
pipe.send("super beans\n")
event.wait(
0.05
) # note that this will always be taken - the callback shouldn't fire
self.assertFalse(event.is_set())
def test_sends_hangups(self):
pipe = PipeWrapper()
event = threading.Event()
def callback(flag):
if flag != select.POLLHUP and flag != select.POLLNVAL:
self.assertEqual(flag, select.POLLHUP | select.POLLNVAL)
event.set()
self.manager.add_file(pipe.reader, callback)
pipe.writer.close()
event.wait(1)
self.assertTrue(event.is_set())
def setUp(self):
self.manager = IOManager()
class SimulationLoopFourier(SimulationLoop):
"""This class acts as the main simulation loop. It owns a propagator that
propagates a set of initial values during a time evolution.
"""
def __init__(self, parameters):
"""Create a new simulation loop instance for a simulation
using the Fourier propagation method.
:param parameters: The simulation parameters.
:type parameters: A :py:class:`ParameterProvider` instance.
"""
# Keep a reference to the simulation parameters
self.parameters = parameters
# The time propagator instance driving the simulation.
self.propagator = None
# An `IOManager` instance for saving simulation results.
self.IOManager = None
# Which data do we want to save
self._tm = self.parameters.get_timemanager()
# Set up serialization of simulation data
self.IOManager = IOManager()
self.IOManager.create_file()
self.IOManager.create_block()
# Save the simulation parameters
self.IOManager.add_parameters()
self.IOManager.save_parameters(parameters)
def prepare_simulation(self):
r"""Set up a Fourier propagator for the simulation loop. Set the
potential and initial values according to the configuration.
:raise: :py:class:`ValueError` For invalid or missing input data.
"""
# The potential instance
potential = BlockFactory().create_potential(self.parameters)
# Compute the position space grid points
grid = BlockFactory().create_grid(self.parameters)
# Construct initial values
I = Initializer(self.parameters)
initialvalues = I.initialize_for_fourier(grid)
# Transform the initial values to the canonical basis
BT = BasisTransformationWF(potential)
BT.set_grid(grid)
BT.transform_to_canonical(initialvalues)
# Finally create and initialize the propagator instance
self.propagator = FourierPropagator(potential, initialvalues, self.parameters)
# Write some initial values to disk
slots = self._tm.compute_number_saves()
self.IOManager.add_grid(self.parameters, blockid="global")
self.IOManager.add_fourieroperators(self.parameters)
self.IOManager.add_wavefunction(self.parameters, timeslots=slots)
self.IOManager.save_grid(grid.get_nodes(flat=True), blockid="global")
self.IOManager.save_fourieroperators(self.propagator.get_operators())
self.IOManager.save_wavefunction(initialvalues.get_values(), timestep=0)
def run_simulation(self):
r"""Run the simulation loop for a number of time steps.
"""
# The number of time steps we will perform.
nsteps = self._tm.compute_number_timesteps()
# Run the prepropagate step
self.propagator.pre_propagate()
# Note: We do not save any data here
# Run the simulation for a given number of timesteps
for i in xrange(1, nsteps+1):
print(" doing timestep "+str(i))
self.propagator.propagate()
# Save some simulation data
if self._tm.must_save(i):
# Run the postpropagate step
self.propagator.post_propagate()
self.IOManager.save_wavefunction(self.propagator.get_wavefunction().get_values(), timestep=i)
# Run the prepropagate step
self.propagator.pre_propagate()
# Run the postpropagate step
self.propagator.post_propagate()
# Note: We do not save any data here
def end_simulation(self):
"""Do the necessary cleanup after a simulation. For example request the
:py:class:`IOManager` to write the data and close the output files.
"""
self.IOManager.finalize()
def setUp(self):
self.io_manager_16 = IOManager(FAT_16_IMAGE_FOR_DEFRAG)
self.error_maker_16 = self.initialisation_error_maker(self.io_manager_16)
self.io_manager_32 = IOManager(FAT_32_IMAGE_FOR_DEFRAG)
self.error_maker_32 = self.initialisation_error_maker(self.io_manager_32)
def test_jump_back_with_correct_value(self):
io_manager = IOManager('test_io_manager')
io_manager.read_some_bytes(1)
io_manager.jump_back(1)
self.assertEqual(io_manager._current_position, 0)
def test_read_bytes_and_convert_to_int_with_incorrect_value(self):
io_manager = IOManager('test_io_manager')
self.check_error(io_manager.read_bytes_and_convert_to_int, ValueError, True, 0)
self.check_error(io_manager.read_bytes_and_convert_to_int, ValueError, True, -10)
def test_read_bytes_and_convert_to_int_with_correct_value(self):
io_manager = IOManager('test_io_manager')
result = io_manager.read_bytes_and_convert_to_int(1)
self.assertEqual(53, result)
class SimulationLoopHagedornInhomogeneous(SimulationLoop):
r"""This class acts as the main simulation loop. It owns a propagator that
propagates a set of initial values during a time evolution.
"""
def __init__(self, parameters):
r"""Create a new simulation loop instance for a simulation
using the semiclassical Hagedorn wavepacket based propagation
method.
:param parameters: The simulation parameters.
:type parameters: A :py:class:`ParameterProvider` instance.
"""
# Keep a reference to the simulation parameters
self.parameters = parameters
# The time propagator instance driving the simulation.
self.propagator = None
# A `IOManager` instance for saving simulation results.
self.IOManager = None
# The time manager
self._tm = TimeManager(self.parameters)
# Set up serialization of simulation data
self.IOManager = IOManager()
self.IOManager.create_file(self.parameters)
def prepare_simulation(self):
r"""Set up a Hagedorn propagator for the simulation loop. Set the
potential and initial values according to the configuration.
:raise ValueError: For invalid or missing input data.
"""
# The potential instance
potential = BlockFactory().create_potential(self.parameters)
# Project the initial values to the canonical basis
BT = BasisTransformationHAWP(potential)
# Finally create and initialize the propagator instace
# TODO: Attach the "leading_component to the hawp as codata
self.propagator = HagedornPropagatorInhomogeneous(
self.parameters, potential)
# Create suitable wavepackets
for packet_descr in self.parameters["initvals"]:
packet = BlockFactory().create_wavepacket(packet_descr)
# Transform to canonical basis
BT.set_matrix_builder(packet.get_quadrature())
BT.transform_to_canonical(packet)
# And hand over
self.propagator.add_wavepacket((packet, ))
# Add storage for each packet
npackets = len(self.parameters["initvals"])
slots = self._tm.compute_number_saves()
for i in xrange(npackets):
bid = self.IOManager.create_block()
self.IOManager.add_inhomogwavepacket(self.parameters,
timeslots=slots,
blockid=bid)
# Write some initial values to disk
for packet in self.propagator.get_wavepackets():
self.IOManager.save_inhomogwavepacket_description(
packet.get_description())
# Pi
self.IOManager.save_inhomogwavepacket_parameters(
packet.get_parameters(), timestep=0)
# Basis shapes
for shape in packet.get_basis_shape():
self.IOManager.save_inhomogwavepacket_basisshapes(shape)
# Coefficients
self.IOManager.save_inhomogwavepacket_coefficients(
packet.get_coefficients(),
packet.get_basis_shape(),
timestep=0)
def run_simulation(self):
r"""Run the simulation loop for a number of time steps.
"""
# The number of time steps we will perform.
nsteps = self._tm.compute_number_timesteps()
# Run the simulation for a given number of timesteps
for i in xrange(1, nsteps + 1):
print(" doing timestep " + str(i))
self.propagator.propagate()
# Save some simulation data
if self._tm.must_save(i):
# TODO: Generalize for arbitrary number of wavepackets
packets = self.propagator.get_wavepackets()
assert len(packets) == 1
for packet in packets:
# Pi
self.IOManager.save_inhomogwavepacket_parameters(
packet.get_parameters(), timestep=i)
# Basis shapes (in case they changed!)
for shape in packet.get_basis_shape():
self.IOManager.save_inhomogwavepacket_basisshapes(
shape)
# Coefficients
self.IOManager.save_inhomogwavepacket_coefficients(
packet.get_coefficients(),
packet.get_basis_shape(),
timestep=i)
def end_simulation(self):
r"""Do the necessary cleanup after a simulation. For example request the
:py:class:`IOManager` to write the data and close the output files.
"""
self.IOManager.finalize()
def wire():
io = IOManager()
#leds = LEDManager()
ap = fft.AudioProcessor()
driver = DriverLPD8806(160,c_order=ChannelOrder.RGB,use_py_spi=True,dev="/dev/spidev0.0",SPISpeed=16)
ledmatrix = led.LEDMatrix(driver,width=20,height=8,threadedUpdate=True,rotation=1,serpentine=False)
io.start_stream()
update = 0
count = 0.0
while True:
#This reads the data from the input stream
data = io.read()
#This writes the data out to the hardware audio out port
io.write(data)
if len(data):
brightness = ap.get_visualizer_array(data,io.chunk,io.rate)
if update == 0:
update = 10
else:
update = 0
if int(count) >= int(255.0):
count = 0.0
else:
count += .25
"""
HORIZONTAL
leds.fill(color=colors.hue2rgb_rainbow(int(count)),start=update*20,end=int((update*20+(brightness[update]*20))))
leds.fill(color=(0,0,0),start=int(((update*20+(brightness[update]*20)))),end=(update* 20)+20)
"""
ledmatrix.drawLine(x0=0,y0=int(update),x1=int(brightness[update]*7),y1=update,color=colors.hue2rgb_rainbow(int(count)))
ledmatrix.drawLine(x0=int(brightness[update]*7),y0=update,x1=7,y1=update,color=(0,0,0))
ledmatrix.drawLine(x0=0,y0=update+1,x1=int(brightness[update+1]*8),y1=update+1,color=colors.hue2rgb_rainbow(int(count)))
ledmatrix.drawLine(x0=int(brightness[update+1]*8),y0=update+1,x1=8,y1=update+1,color=(0,0,0))
ledmatrix.drawLine(x0=0,y0=update+2,x1=int(brightness[update+2]*8),y1=update+2,color=colors.hue2rgb_rainbow(int(count)))
ledmatrix.drawLine(x0=int(brightness[update+2]*8),y0=update+2,x1=8,y1=update+2,color=(0,0,0))
ledmatrix.drawLine(x0=0,y0=update+3,x1=int(brightness[update+3]*7),y1=update+3,color=colors.hue2rgb_rainbow(int(count)))
ledmatrix.drawLine(x0=int(brightness[update+3]*8),y0=update+3,x1=8,y1=update+3,color=(0,0,0))
ledmatrix.drawLine(x0=0,y0=update+4,x1=int(brightness[update+4]*8),y1=update+4,color=colors.hue2rgb_rainbow(int(count)))
ledmatrix.drawLine(x0=int(brightness[update+4]*8),y0=update+4,x1=8,y1=update+4,color=(0,0,0))
ledmatrix.drawLine(x0=0,y0=update+5,x1=int(brightness[update+5]*8),y1=update+5,color=colors.hue2rgb_rainbow(int(count)))
ledmatrix.drawLine(x0=int(brightness[update+5]*8),y0=update+5,x1=8,y1=update+5,color=(0,0,0))
ledmatrix.drawLine(x0=0,y0=update+6,x1=int(brightness[update+6]*8),y1=update+6,color=colors.hue2rgb_rainbow(int(count)))
ledmatrix.drawLine(x0=int(brightness[update+6]*8),y0=update+6,x1=8,y1=update+6,color=(0,0,0))
ledmatrix.drawLine(x0=0,y0=update+7,x1=int(brightness[update+7]*8),y1=update+7,color=colors.hue2rgb_rainbow(int(count)))
ledmatrix.drawLine(x0=int(brightness[update+7]*8),y0=update+7,x1=8,y1=update+7,color=(0,0,0))
ledmatrix.drawLine(x0=0,y0=update+8,x1=int(brightness[update+8]*8),y1=update+8,color=colors.hue2rgb_rainbow(int(count)))
ledmatrix.drawLine(x0=int(brightness[update+8]*8),y0=update+8,x1=8,y1=update+8,color=(0,0,0))
ledmatrix.drawLine(x0=0,y0=update+9,x1=int(brightness[update+9]*8),y1=update+9,color=colors.hue2rgb_rainbow(int(count)))
ledmatrix.drawLine(x0=int(brightness[update+9]*8),y0=update+9,x1=8,y1=update+9,color=(0,0,0))
ledmatrix.update()
else:
ledmatrix.fillScreen(color=(0,0,0))
def _init_dp(file_name):
io_manager = IOManager(file_name)
info = InfoAboutImage(io_manager)
fp = FatProcessor(info, io_manager)
return DirectoryParser(fp)
def __init__(self, io_manager: IOManager):
io_manager.seek(0)
self.BS_jmpBoot = io_manager.read_bytes_and_convert_to_int(3)
self.BS_OEMName = io_manager.read_bytes_and_convert_to_int(8)
self.BPB_BytsPerSec = io_manager.read_bytes_and_convert_to_int(
2) # Количество байт в одном секторе
# (512, 1024, 2048 or 4096)
self.BPB_SecPerClus = io_manager.read_bytes_and_convert_to_int(
1) # Количество секторов в кластере
self.BPB_ResvdSecCnt = io_manager.read_bytes_and_convert_to_int(2)
self.BPB_NumFATs = io_manager.read_bytes_and_convert_to_int(
1) # Количество таблиц FAT на диске
self.BPB_RootEntCnt = io_manager.read_bytes_and_convert_to_int(
2) # Для FAT16 поле содержит число 32-байтных
# элементов корневой директории. Для FAT32 дисков,
# это поле должно быть 0
self.BPB_TotSec16 = io_manager.read_bytes_and_convert_to_int(
2) # Старое 16-битное поле: общее количество
# секторов на диске
self.BPB_Media = io_manager.read_bytes_and_convert_to_int(1)
self.BPB_FATSz16 = io_manager.read_bytes_and_convert_to_int(
2) # FAT16 это количество секторов одной FAT. Для
# FAT32 это значение 0
self.BPB_SecPerTrk = io_manager.read_bytes_and_convert_to_int(2)
self.BPB_NumHeads = io_manager.read_bytes_and_convert_to_int(2)
self.BPB_HiddSec = io_manager.read_bytes_and_convert_to_int(4)
self.BPB_TotSec32 = io_manager.read_bytes_and_convert_to_int(
4) # Новое 32-битное поле: общее количество
# секторов на диске
self.BPB_FATSz32 = io_manager.read_bytes_and_convert_to_int(
4) # Поле, необходимое для некоторых вычислений,
# может быть некорректным в некоторых ситуациях
io_manager.jump_back(4) # сохранение целостности данных
if self.BPB_FATSz16 != 0:
fat_sz = self.BPB_FATSz16
else:
fat_sz = self.BPB_FATSz32
self._root_dir_sectors = (
(self.BPB_RootEntCnt * 32) +
(self.BPB_BytsPerSec - 1)) // self.BPB_BytsPerSec
self.first_data_sector = self.BPB_ResvdSecCnt + self._root_dir_sectors + self.BPB_NumFATs * fat_sz
self.count_of_clusters = self._get_count_of_clusters()
self.fat_type = self._get_fat_type()
if self.fat_type == TypeOfFAT.fat16:
self._parse_fat16_structure(io_manager)
else:
self._parse_fat32_structure(io_manager)
self.first_root_dir_sec = self._get_first_root_dir_sec()
if __name__ == "__main__":
from Histo1D import Histo1D
from IOManager import IOManager
filename = "../data/ds_data18.root"
logy = True
h1 = ROOT.TH1D("test1", "TITLE_1", 20, 0.0, 400.0)
h2 = ROOT.TH1D("test2", "TITLE_2", 20, 0.0, 400.0)
h3 = ROOT.TH1D("test3", "TITLE_3", 20, 0.0, 400.0)
IOManager.FillHistogram(h1,
filename,
tree="DirectStau",
varexp="MET",
cuts="tau1Pt>650")
IOManager.FillHistogram(h2,
filename,
tree="DirectStau",
varexp="MET",
cuts="tau1Pt>750")
IOManager.FillHistogram(h3,
filename,
tree="DirectStau",
varexp="MET",
cuts="tau1Pt>550")
p1 = Plot(npads=1)
p1.Register(h1, 0, template="signal", logy=logy, xunits="GeV")
def test_fat32_recognition(self):
io_manager = IOManager(FAT_32_IMAGE)
file_system = parse_disk_image(io_manager)
self.assertEqual(file_system.get_type_of_fat(), TypeOfFAT.fat32)
class SimulationLoopFourier(SimulationLoop):
r"""
This class acts as the main simulation loop. It owns a propagator that
propagates a set of initial values during a time evolution. All values are
read from the ``Parameters.py`` file.
"""
def __init__(self, parameters):
r"""
Create a new simulation loop instance.
"""
# Keep a reference to the simulation parameters
self.parameters = parameters
#: The time propagator instance driving the simulation.
self.propagator = None
#: A ``IOManager`` instance for saving simulation results.
self.IOManager = None
#: The number of time steps we will perform.
self.nsteps = parameters["nsteps"]
# Set up serializing of simulation data
self.IOManager = IOManager()
self.IOManager.create_file(self.parameters)
self.IOManager.create_block()
def prepare_simulation(self):
r"""
Set up a Fourier propagator for the simulation loop. Set the
potential and initial values according to the configuration.
:raise ValueError: For invalid or missing input data.
"""
# Compute the position space grid points
nodes = self.parameters["f"] * sp.pi * sp.arange(-1, 1, 2.0/self.parameters["ngn"], dtype=np.complexfloating)
# The potential instance
potential = PF().create_potential(self.parameters)
# Check for enough initial values
if not self.parameters.has_key("initial_values"):
if len(self.parameters["parameters"]) < potential.get_number_components():
raise ValueError("Too few initial states given. Parameters are missing.")
if len(self.parameters["coefficients"]) < potential.get_number_components():
raise ValueError("Too few initial states given. Coefficients are missing.")
# Calculate the initial values sampled from a hagedorn wave packet
d = dict([("ncomponents", 1), ("basis_size", self.parameters["basis_size"]), ("eps", self.parameters["eps"])])
# Initial values given in the "fourier" specific format
if self.parameters.has_key("initial_values"):
initialvalues = [ np.zeros(nodes.shape, dtype=np.complexfloating) for i in xrange(self.parameters["ncomponents"]) ]
for level, params, coeffs in self.parameters["initial_values"]:
hwp = HagedornWavepacket(d)
hwp.set_parameters(params)
for index, value in coeffs:
hwp.set_coefficient(0, index, value)
iv = hwp.evaluate_at(nodes, component=0, prefactor=True)
initialvalues[level] = initialvalues[level] + iv
# Initial value read in compatibility mode to the packet algorithms
else:
# See if we have a list of parameter tuples or just a single 5-tuple
# This is for compatibility with the inhomogeneous case.
try:
# We have a list of parameter tuples this is ok for the loop below
len(self.parameters["parameters"][0])
parameters = self.parameters["parameters"]
except TypeError:
# We have just a single 5-tuple of parameters, we need to replicate for looping
parameters = [ self.parameters["parameters"] for i in xrange(self.parameters["ncomponents"]) ]
initialvalues = []
for level, item in enumerate(parameters):
hwp = HagedornWavepacket(d)
hwp.set_parameters(item)
# Set the coefficients of the basis functions
for index, value in self.parameters["coefficients"][level]:
hwp.set_coefficient(0, index, value)
iv = hwp.evaluate_at(nodes, component=0, prefactor=True)
initialvalues.append(iv)
# Project the initial values to the canonical basis
initialvalues = potential.project_to_canonical(nodes, initialvalues)
# Store the initial values in a WaveFunction object
IV = WaveFunction(self.parameters)
IV.set_grid(nodes)
IV.set_values(initialvalues)
# Finally create and initialize the propagator instace
self.propagator = FourierPropagator(potential, IV, self.parameters)
# Which data do we want to save
tm = self.parameters.get_timemanager()
slots = tm.compute_number_saves()
print(tm)
self.IOManager.add_grid(self.parameters, blockid="global")
self.IOManager.add_fourieroperators(self.parameters)
self.IOManager.add_wavefunction(self.parameters, timeslots=slots)
# Write some initial values to disk
self.IOManager.save_grid(nodes, blockid="global")
self.IOManager.save_fourieroperators(self.propagator.get_operators())
self.IOManager.save_wavefunction(IV.get_values(), timestep=0)
def run_simulation(self):
r"""
Run the simulation loop for a number of time steps. The number of steps is calculated in the ``initialize`` function.
"""
tm = self.parameters.get_timemanager()
# Run the simulation for a given number of timesteps
for i in xrange(1, self.nsteps+1):
print(" doing timestep "+str(i))
self.propagator.propagate()
# Save some simulation data
if tm.must_save(i):
self.IOManager.save_wavefunction(self.propagator.get_wavefunction().get_values(), timestep=i)
def end_simulation(self):
r"""
Do the necessary cleanup after a simulation. For example request the
IOManager to write the data and close the output files.
"""
self.IOManager.finalize()
def _parse_fat32_structure(self, io_manager: IOManager):
self.BPB_FATSz32 = io_manager.read_bytes_and_convert_to_int(4)
self.BPB_ExtFlags = io_manager.read_bytes_and_convert_to_int(2)
self.BPB_FSVer = io_manager.read_bytes_and_convert_to_int(2)
self.BPB_RootClus = io_manager.read_bytes_and_convert_to_int(
4) # номер первого кластера корневой директории
self.BPB_FSInfo = io_manager.read_bytes_and_convert_to_int(2)
self.BPB_BkBootSec = io_manager.read_bytes_and_convert_to_int(2)
self.BPB_Reserved = io_manager.read_bytes_and_convert_to_int(12)
self.BS_DrvNum = io_manager.read_bytes_and_convert_to_int(1)
self.BS_Reserved1 = io_manager.read_bytes_and_convert_to_int(1)
self.BS_BootSig = io_manager.read_bytes_and_convert_to_int(1)
self.BS_VolID = io_manager.read_bytes_and_convert_to_int(4)
self.BS_VolLab = io_manager.read_bytes_and_convert_to_int(11)
self.BS_FilSysType = io_manager.read_bytes_and_convert_to_int(8)
def test_jump_back_with_incorrect_value(self):
io_manager = IOManager('test_io_manager')
io_manager.read_some_bytes(1)
self.check_error(io_manager.jump_back, ValueError, True, 2)
self.check_error(io_manager.jump_back, ValueError, True, 0)
self.check_error(io_manager.jump_back, ValueError, True, -10)
def test_read_some_bytes_with_correct_value(self):
io_manager = IOManager('test_io_manager')
result = io_manager.read_some_bytes(1)
self.assertEqual(b'5', result)
def _init_fp(file_name):
io_manager = IOManager(file_name)
info = InfoAboutImage(io_manager)
return FatProcessor(info, io_manager)
class SimulationLoopSpawnAdiabatic(SimulationLoop):
r"""
This class acts as the main simulation loop. It owns a propagator that
propagates a set of initial values during a time evolution. All values are
read from the ``Parameters.py`` file.
"""
def __init__(self, parameters):
r"""
Create a new simulation loop instance.
"""
# Keep a reference to the simulation parameters
self.parameters = parameters
self.tm = TimeManager(parameters)
#: The time propagator instance driving the simulation.
self.propagator = None
#: A ``IOManager`` instance for saving simulation results.
self.iom = IOManager()
self.iom.create_file(parameters)
self.gid = self.iom.create_group()
def prepare_simulation(self):
r"""
Set up a Spawning propagator for the simulation loop. Set the
potential and initial values according to the configuration.
:raise ValueError: For invalid or missing input data.
"""
potential = PotentialFactory().create_potential(self.parameters)
N = potential.get_number_components()
# Check for enough initial values
if self.parameters["leading_component"] > N:
raise ValueError("Leading component index out of range.")
if len(self.parameters["parameters"]) < N:
raise ValueError("Too few initial states given. Parameters are missing.")
if len(self.parameters["coefficients"]) < N:
raise ValueError("Too few initial states given. Coefficients are missing.")
# Create a suitable wave packet
packet = HagedornWavepacket(self.parameters)
packet.set_parameters(self.parameters["parameters"][self.parameters["leading_component"]])
packet.set_quadrature(None)
# Set the initial values
for component, data in enumerate(self.parameters["coefficients"]):
for index, value in data:
packet.set_coefficient(component, index, value)
# Project the initial values to the canonical basis
packet.project_to_canonical(potential)
# Finally create and initialize the propagator instace
inner = HagedornPropagator(potential, packet, self.parameters["leading_component"], self.parameters)
self.propagator = SpawnAdiabaticPropagator(inner, potential, packet, self.parameters["leading_component"], self.parameters)
# Write some initial values to disk
slots = self.tm.compute_number_saves()
for packet in self.propagator.get_wavepackets():
bid = self.iom.create_block(groupid=self.gid)
self.iom.add_wavepacket(self.parameters, timeslots=slots, blockid=bid)
self.iom.save_wavepacket_coefficients(packet.get_coefficients(), blockid=bid, timestep=0)
self.iom.save_wavepacket_parameters(packet.get_parameters(), blockid=bid, timestep=0)
def run_simulation(self):
r"""
Run the simulation loop for a number of time steps. The number of steps is calculated in the ``initialize`` function.
"""
tm = self.tm
# Run the simulation for a given number of timesteps
for i in xrange(1, tm.get_nsteps()+1):
print(" doing timestep "+str(i))
self.propagator.propagate(tm.compute_time(i))
# Save some simulation data
if tm.must_save(i):
# Check if we need more data blocks for newly spawned packets
while self.iom.get_number_blocks(groupid=self.gid) < self.propagator.get_number_packets():
bid = self.iom.create_block(groupid=self.gid)
self.iom.add_wavepacket(self.parameters, blockid=bid)
for index, packet in enumerate(self.propagator.get_wavepackets()):
self.iom.save_wavepacket_coefficients(packet.get_coefficients(), timestep=i, blockid=index)
self.iom.save_wavepacket_parameters(packet.get_parameters(), timestep=i, blockid=index)
def end_simulation(self):
r"""
Do the necessary cleanup after a simulation. For example request the
IOManager to write the data and close the output files.
"""
self.iom.finalize()