def fit(self, x, y, testx, testy, verbose=False, autosave=True):
self.x = x = x.reshape(x.shape[0], self.M, -1)
self.y = y
self.testx = testx = testx.reshape(testx.shape[0], self.M, -1)
self.testy = y
self.Ms = []
self.PCAs = []
for i in xrange(self.M):
trainx, testx, _pca = pca(self.x[:, i, :], self.testx[:, i, :], self.Ppca, verbose=verbose, get_pca=True)
lmnn = LMNN_GPU(K=self.K, mu=self.mu, maxS=self.maxS, dim=trainx.shape[1])
print '[%d]pre-train-acc: %.3f%% pre-test-acc: %.3f%% %s'%(i, knn(trainx, trainx, y, y, lmnn._M, self.K), knn(trainx, testx, y, testy, lmnn._M, self.K), ' '*30)
lmnn.fit(trainx, y, lr=self.lr, max_iter=self.max_iter, reset=self.reset, verbose=False)
print '[%d]post-train-acc: %.3f%% post-test-acc: %.3f%% %s'%(i, knn(trainx, trainx, y, y, lmnn._M, self.K), knn(trainx, testx, y, testy, lmnn._M, self.K), ' '*30)
self.Ms.append(lmnn)
self.PCAs.append(_pca)
trainx = self.transform(self.x)
testx = self.transform(self.testx)
dim = trainx.shape[1]
print 'train-acc: %.3f%% test-acc: %.3f%% %s'%(knn(trainx, trainx, y, y, np.eye(dim), self.K), knn(trainx, testx, y, testy, np.eye(dim), self.K), ' '*30)
if autosave:
print 'Auto saving ...'
cPickle.dump(self, open('temp.MLMNN', 'w'))
return self
def fittest(self, trainx, testx, trainy, testy, stage):
__x = self.transform(trainx, stage)
__testx = self.transform(testx, stage)
train_acc, train_cfm = knn(__x, __x, trainy, trainy, None, self.K, cfmatrix=True)
test_acc, test_cfm = knn(__x, __testx, trainy, testy, None, self.K, cfmatrix=True)
print 'shape: {}'.format(__x.shape)
print 'train-acc: %.3f%% test-acc: %.3f%% %s'%(\
train_acc, test_acc, ' '*30)
print 'train confusion matrix:\n {}\ntest confusion matrix:\n {}'.format(
train_cfm, test_cfm)
def fittest(self, trainx, testx, trainy, testy, G=-1, alpha=None):
trainx = self.transform(trainx, G, alpha=alpha)
testx = self.transform(testx, G, alpha=alpha)
train_acc, train_cfm = knn(trainx, trainx, trainy, trainy, None, self.K, cfmatrix=True)
test_acc, test_cfm = knn(trainx, testx, trainy, testy, None, self.K, cfmatrix=True)
if self.verbose: print 'shape: {}'.format(trainx.shape)
if self.verbose: print 'train-acc: %.3f%% %s'%(train_acc, ' '*30)
if self.verbose: print 'train confusion matrix:\n {}'.format(train_cfm)
if self.verbose:
print 'test-acc: %.3f%%'%(test_acc)
print 'test confusion matrix:\n {}'.format(test_cfm)
return train_acc, test_acc
def fittest(self, trainx, testx, trainy, testy, test_range=None, **kwargs):
if test_range==None: test_range = [None]
for ranges in test_range:
trainx = self.transform(trainx, ranges, **kwargs)
testx = self.transform(testx, ranges, **kwargs)
train_acc, train_cfm = knn(trainx, trainx, trainy, trainy, None, self.K, cfmatrix=True)
if testx != None: test_acc, test_cfm = knn(trainx, testx, trainy, testy, None, self.K, cfmatrix=True)
print 'shape: {}'.format(trainx.shape)
print 'train-acc: %.3f%% %s'%(train_acc, ' '*30)
print 'train confusion matrix:\n {}'.format(train_cfm)
print 'test-acc: %.3f%%'%(test_acc)
print 'test confusion matrix:\n {}'.format(test_cfm)
return train_acc, test_acc
def fittest(self, trainx, testx, y, testy, M=-1):
__x = self.transform(trainx, M)
if testx != None: __testx = self.transform(testx, M)
train_acc, train_cfm = knn(__x, __x, y, y, None, self.K, cfmatrix=True)
if testx != None: test_acc, test_cfm = knn(__x, __testx, y, testy, None, self.K, cfmatrix=True)
if self.verbose: print 'shape: {}'.format(__x.shape)
if self.verbose: print 'train-acc: %.3f%% %s'%(train_acc, ' '*30)
if self.verbose: print 'train confusion matrix:\n {}'.format(train_cfm)
if testx != None and self.verbose:
print 'test-acc: %.3f%%'%(test_acc)
print 'test confusion matrix:\n {}'.format(test_cfm)
if testx != None:
return train_acc, test_acc
else:
return test_acc
def fit(self, x, y, testx, testy, verbose=False, autosave=True):
self.x = x = x.reshape(x.shape[0], self.M, -1)
self.y = y
self.testx = testx = testx.reshape(testx.shape[0], self.M, -1)
self.testy = y
self.Ms = []
self.PCAs = []
for i in xrange(self.M):
trainx, testx, _pca = pca(self.x[:, i, :], self.testx[:, i, :], self.Ppca, verbose=verbose, get_pca=True)
lmnn = LMNN_GPU(K=self.K, mu=self.mu, maxS=self.maxS, dim=trainx.shape[1])
print '[%d]pre-train-acc: %.3f%% pre-test-acc: %.3f%% %s'%(i, knn(trainx, trainx, y, y, lmnn._M, self.K), knn(trainx, testx, y, testy, lmnn._M, self.K), ' '*30)
lmnn.fit(trainx, y, lr=self.lr, max_iter=self.max_iter, reset=self.reset, verbose=False)
print '[%d]post-train-acc: %.3f%% post-test-acc: %.3f%% %s'%(i, knn(trainx, trainx, y, y, lmnn._M, self.K), knn(trainx, testx, y, testy, lmnn._M, self.K), ' '*30)
self.Ms.append(lmnn)
self.PCAs.append(_pca)
trainx = self.transform(self.x)
testx = self.transform(self.testx)
trainx[np.isnan(trainx)] = 0
trainx[np.isinf(trainx)] = 0
testx[np.isnan(testx)] = 0
testx[np.isinf(testx)] = 0
print 'Final train shape:',trainx.shape
print 'Final test shape:',testx.shape
trainx, testx = pca(trainx, testx, self.Ppca, verbose=True)
print 'Final train shape:',trainx.shape
print 'Final test shape:',testx.shape
# integrated metric
lmnn = LMNN_GPU(K=self.K, mu=self.mu, maxS=10000, dim=trainx.shape[1])
for i in xrange(10):
print '[%d]pre-train-acc: %.3f%% pre-test-acc: %.3f%% %s'%(i, knn(trainx, trainx, y, y, lmnn._M, self.K), knn(trainx, testx, y, testy, lmnn._M, self.K), ' '*30)
lmnn.fit(trainx, y, lr=2e-5, max_iter=50, reset=50, verbose=False)
print '[%d]post-train-acc: %.3f%% post-test-acc: %.3f%% %s'%(i, knn(trainx, trainx, y, y, lmnn._M, self.K), knn(trainx, testx, y, testy, lmnn._M, self.K), ' '*30)
if autosave:
print 'Auto saving ...'
cPickle.dump(self, open('temp.MLMNN', 'w'))
return self
def fit(self, x, y, testx, testy,
maxS=100, lr=1e-7, max_iter=100, reset=20,
Part=None,
verbose=False, autosave=True): #
if Part is not None and Part != self.M:
x = x.reshape(x.shape[0], self.M, -1)[:, :Part, :].reshape(x.shape[0], -1)
testx = testx.reshape(testx.shape[0], self.M, -1)[:, :Part, :].reshape(testx.shape[0], -1)
self.M = Part
# normalize in each part
#x = normalize(x.reshape(x.shape[0]*self.M, -1), 'l1').reshape(x.shape[0], -1)
#testx = normalize(testx.reshape(testx.shape[0]*self.M, -1), 'l1').reshape(testx.shape[0], -1)
# normalize in each sample
if self.kernelf:
x = self.kernelf(x)
testx = self.kernelf(testx)
if self.normalize_axis:
x = normalize(x, axis=self.normalize_axis)
testx = normalize(testx, axis=self.normalize_axis)
self.maxS = maxS
orix = x
if self.dim == -1: # no pca needed
print x.shape
self.dim = x.shape[1]/self.M
self.didpca = False
else: # do the pca and store the solver
self.didpca = True
x = x.reshape(x.shape[0] * self.M, -1)
print 'Splited x.shape:', x.shape
pca = PCA(n_components=self.dim)
x = pca.fit_transform(x)
self.pca = pca
print x.shape
x = x.reshape(x.shape[0], self.M, self.dim)
print 'Final x.shape:', x.shape
stackx = x.copy()
for i in xrange(1, self.M):
stackx[i] += stackx[i-1]
try:
lM = self.lM
gM = self.gM
except:
self.build()
lM = self.lM
gM = self.gM
updates = []
givens = {self._x: np.asarray(x, dtype='float32'),
self._y: np.asarray(y, dtype='int32')}
if self.localM: updates.extend(self.lupdate)
if self.globalM:
updates.extend(self.gupdate)
givens.update({self._stackx: np.asarray(stackx, dtype='float32')})
self.train_local_model = theano.function(
[self._set, self._neighborpairs, self._lr],
[
T.stack(self.lpullerror),
T.stack(self.gpullerror),
T.stack(self.lpusherror),
T.stack(self.gpusherror)],
updates = updates,
givens = givens)
# get_debug = theano.function(
# [self._set],
# self.debug,
# givens = {self._stackx: np.asarray(stackx, dtype='float32')})
__x = x
lr = np.array([lr]*(self.M*2), dtype='float32')
for _ in xrange(40):
neighbors = self._get_neighbors(__x, y)
t = 0
while t < max_iter:
if t % reset == 0:
active_set = self._get_active_set(x, y, neighbors)
last_error = np.array([np.inf]*(self.M*2))
print 'Iter: {} lr: {} '.format(t, lr)
res = np.array(self.train_local_model(active_set, neighbors, lr)).reshape(-1, self.M*2)
error = res.T.sum(1)
print '\tlpull:{}\tgpull:{}\n\tlpush:{}\tgpush:{}'.\
format(res[0, :self.M], res[0, self.M:],\
res[1, :self.M], res[1, self.M:])
#print np.array(get_debug(active_set))
for i in xrange(self.M):
_M = lM[i].get_value()
lM[i].set_value(np.array(self._numpy_project_sd(_M), dtype='float32'))
for i in xrange(self.M):
_M = gM[i].get_value()
gM[i].set_value(np.array(self._numpy_project_sd(_M), dtype='float32'))
lr = lr*1.01*(last_error>error) + lr*0.5*(last_error<=error)
last_error = error
t += 1
__x = self.transform(orix)
__testx = self.transform(testx)
train_acc, train_cfm = knn(__x, __x, y, y, None, self.K, cfmatrix=True)
test_acc, test_cfm = knn(__x, __testx, y, testy, None, self.K, cfmatrix=True)
print 'shape: {}'.format(__x.shape)
print 'train-acc: %.3f%% test-acc: %.3f%% %s'%(\
train_acc, test_acc, ' '*30)
print 'train confusion matrix:\n {}\ntest confusion matrix:\n {}'.format(
train_cfm, test_cfm)
# __y = label_binarize(y, classes=range(8))
# __testy = label_binarize(testy, classes=range(8))
# svm = OneVsRestClassifier(SVC(kernel='rbf')).fit(__x, __y)
# train_acc = float((svm.predict(__x) == __y).sum())/y.shape[0]
# test_acc = float((svm.predict(__testx) == __testy).sum())/testy.shape[0]
# print '[svm]train-acc: %.3f%% test-acc: %.3f%% %s'%(\
# train_acc, test_acc, ' '*30)
# print 'visualizing round{} ...'.format(_)
# title = 'round{}.train'.format(_)
# visualize(__x, y, title+'_acc{}'.format(train_acc),
# './visualized/{}.png'.format(title))
# title = 'round{}.test'.format(_)
# visualize(__testx, testy, title+'_acc{}'.format(test_acc),
# './visualized/{}.png'.format(title))
if autosave:
print 'Auto saving ...'
self.save('temp.MLMNN')
return self
print trainy.shape
# def kernel(x, y):
# K = np.zeros((x.shape[0], y.shape[0]))
# for i in xrange(x.shape[0]):
# for j in xrange(y.shape[0]):
# K[i, j] = float((x[i]*y[i]).sum())/((x[i]+y[i])**2).sum()
# return K
# clf = svm.SVC(kernel='linear', C=100)
# pred = clf.fit(trainx, trainy).predict(testx)
# print pred
# print testy
# print '{}/{} = {}'.format( (pred == testy).sum(), len(testy), (pred == testy).sum()/float(len(testy)) )
# print '{}'.format( pred - testy )
print knn(trainx, testx, trainy, testy, M=None, K=2, cfmatrix=True, prediction=True)
from sklearn.preprocessing import normalize
lmnn = LMNN_duration(
dim=200,
mu=0.5, K=10,
kernelFunction=None, # the explicit kernel
normalizeFunction=None, #normalize, # how data will be normalized
verbose=True)
lmnn.fit(trainx, trainy, testx, testy,
tripleCount=10000,
learning_rate=1e-6,
max_iter=5,
reset_iter=10,
epochs=10,
verbose=True,
variance += ele
if variance > 0.95: break
components += 1
print 'n_components=%d'%components
pca.set_params(n_components=components)
pca.fit(trainx)
trainx = pca.transform(trainx)
testx = pca.transform(testx)
K = 9
dim = components
# knn(trainx, testx, trainy, testy, np.eye(dim), K)
# knn(trainx, testx, trainy, testy, np.random.rand(dim, dim), K)
# My LMNN
lmnn = LMNN_GPU(K=K, mu=0.5, maxS=10000, dim=dim)
print 'pre-train-acc: %.3f%% pre-test-acc: %.3f%% %s'%(knn(trainx, trainx, trainy, trainy, lmnn._M, K), knn(trainx, testx, trainy, testy, lmnn._M, K), ' '*30)
lmnn.fit(trainx, trainy, lr=5e-6, max_iter=1000, reset=50, verbose=True)
print 'pre-train-acc: %.3f%% pre-test-acc: %.3f%% %s'%(knn(trainx, trainx, trainy, trainy, lmnn._M, K), knn(trainx, testx, trainy, testy, lmnn._M, K), ' '*30)
#knn(trainx, testx, trainy, testy, lmnn.M, K)
# L = lmnn.L
# knn(trainx.dot(L), testx.dot(L), trainy, testy, np.eye(L.shape[1]), K)
# # metric learn
# lmnn = _LMNN(k=K, learn_rate=1e-5, max_iter=200)
# L = lmnn.fit(trainx, trainy, verbose=True).L
# knn(trainx, testx, trainy, testy, L.dot(L), K)