If the type is not one of the standard defined models, then it is checked to see if it is a valid genome.
If so, the model and state files (if not set) are searched for in {Data}/models and {Data}/models/genes
"""
import os
import json
import numpy as np
from Modules.misc import oops, terminate, set_docstring, parse_options
from Modules.modelio import ModelIO
import Modules.genomics as genomics
import Modules.models as models
import Modules.frameops as frameops
set_docstring(__doc__)
def setup(options):
""" Create model configuration """
# set up our initial state
errors = False
# If user specified a path to a model, then we have to fix up the model_type.
# If the path is just a model name, delete the path, this will ensure that
# the correct paths get set up by ModelIO()
print(options)
if 'paths' in options and 'model' in options['paths']:
def test_set_docstring():
""" Test for misc.set_docstring """
misc.set_docstring(_T1)
assert misc._DOCSTRING == _T1